rs8253533 SNP Detail

Summary

• ID
  rs8253533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                  TTCAG CCACCAGCCG ACTGGAGCCT GTGGCTTGGA GGTTGCCAGT
  TCAGCTCTGT GTCCTTTCCT TGCTGTCCCA GGAGAGGCTC GCCCTAAGNG AGGCGCTCAG
  CTAGCTGAGA GCACATGGGA TTNTCNAGAG CCTAAGGGAG ATCGCTTTCA ACACTAGGTG
  R
  aaaaaaaaaa aaaaaaaaaa aGGGGGCCCC CCCCAAGGGT TTGGGGGTTT TTGCCAAAAA
  AAAAAAAGGG GCAAA                                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749348	M63335_AN827_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253533					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	75 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1198 bp distal
Rr664456	regulatory region 664456	98 bp distal
Rr664457	regulatory region 664457	within coordinates
Rr664458	regulatory region 664458	236 bp proximal
Rr664459	regulatory region 664459	862 bp proximal
Tssr77601	transcription start site region 77601	1135 bp downstream
Tssr77602	transcription start site region 77602	1057 bp downstream
Tssr77603	transcription start site region 77603	1027 bp downstream
Tssr77604	transcription start site region 77604	982 bp downstream
Tssr77605	transcription start site region 77605	969 bp downstream