rs8253534 SNP Detail

Summary

• ID
  rs8253534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA TCGCCACGAG GGTGGTGTCC
  Y
  CTGGAGGTGC TCTAAGGTGG CACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12749349	M63335_AN828_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C	C	T		T	T	T		C
ss145084046	ENSMUSSNP6279432	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss322692304	CHEV_8_71405843	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8253534					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	320 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1443 bp distal
Rr664456	regulatory region 664456	343 bp distal
Rr664457	regulatory region 664457	within coordinates
Rr664458	regulatory region 664458	within coordinates
Rr664459	regulatory region 664459	617 bp proximal
Tssr77601	transcription start site region 77601	1380 bp downstream
Tssr77602	transcription start site region 77602	1302 bp downstream
Tssr77603	transcription start site region 77603	1272 bp downstream
Tssr77604	transcription start site region 77604	1227 bp downstream
Tssr77605	transcription start site region 77605	1214 bp downstream