rs8253538 SNP Detail

Summary

• ID
  rs8253538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69334754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG GCAGAACTGC ACGAAAGAAA
  M
  GAATCCTGGG TGTTTTGAGG ATACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12749353	M63335_AN828_5	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A	A	C	A		A	A	A		C
ss46195239	mCV24073106	ABI	CRAMUS_MOUSE	f	SNP				A					C
ss145084067	ENSMUSSNP296033	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss322692308	CHEV_8_71406001	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8253538					SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69334754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	478 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1601 bp distal
Rr664456	regulatory region 664456	501 bp distal
Rr664457	regulatory region 664457	within coordinates
Rr664458	regulatory region 664458	146 bp distal
Rr664459	regulatory region 664459	459 bp proximal
Tssr77601	transcription start site region 77601	1538 bp downstream
Tssr77602	transcription start site region 77602	1460 bp downstream
Tssr77603	transcription start site region 77603	1430 bp downstream
Tssr77604	transcription start site region 77604	1385 bp downstream
Tssr77605	transcription start site region 77605	1372 bp downstream