rs8253606 SNP Detail

Summary

• ID
  rs8253606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTGAAT TTAAGGTTAG
  CCTGGCCAGT TCCAGGGCAA GCCAAGGAGA CTTCTGAAAA CGGAGAGATG GGCAGGCAGA
  CACGAAAGTG GAAATTGGGA TCAGAAATGG GCAAGGGTCT ATCCCATGGG ATCATGGACC
  AGGAAACTGA TGGGGTGGAA ACGTGGAGGT GGGGGTGGGG TGGAGATGAG ACTAGATACC
  Y
  GGGACCCGTG CCAGGTCAGT CAAGACCCCC AGCAGATACG AGGGCAGAAT GAAGCCAGAC
  ACGAGATGGG GCCAGTGACA GGTGAATAGG ATCTGAAATG GAGCAGCTAG GGTCATGTGG
  CGGTGCCCTG GGCACAGAAG GTTGGGACCC TACCTCACTG TGCCCTCTTC TTATCTACGC
  AGCCCTCTTG GCCACTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749428	Y07611_AN852_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253606					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20651	CpG island 20651			3 bp proximal
Pkn1	protein kinase N1			mRNA-UTR
				Noncoding-Transcript-Variant
Ptger1	prostaglandin E receptor 1 (subtype EP1)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr666279	regulatory region 666279			1008 bp distal
Rr666280	regulatory region 666280			261 bp distal
Rr666281	regulatory region 666281			157 bp proximal
Rr666282	regulatory region 666282			411 bp proximal
Rr666283	regulatory region 666283			1185 bp proximal
Tssr78279	transcription start site region 78279			1037 bp downstream
Tssr78280	transcription start site region 78280			979 bp downstream
Tssr78281	transcription start site region 78281			814 bp downstream