rs8253607 SNP Detail

Summary

• ID
  rs8253607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCCAG TTCCAGGGCA
  AGCCAAGGAG ACTTCTGAAA ACGGAGAGAT GGGCAGGCAG ACACGAAAGT GGAAATTGGG
  ATCAGAAATG GGCAAGGGTC TATCCCATGG GATCATGGAC CAGGAAACTG ATGGGGTGGA
  AACGTGGAGG TGGGGGTGGG GTGGAGATGA GACTAGATAC CCGGGACCCG TGCCAGGTCA
  R
  TCAAGACCCC CAGCAGATAC GAGGGCAGAA TGAAGCCAGA CACGAGATGG GGCCAGTGAC
  AGGTGAATAG GATCTGAAAT GGAGCAGCTA GGGTCATGTG GCGGTGCCCT GGGCACAGAA
  GGTTGGGACC CTACCTCACT GTGCCCTCTT CTTATCTACG CAGCCCTCTT GGCCACTGAT
  ATGAGCCCCT GCGGGCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749429	Y07611_AN852_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253607					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	within coordinates
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	1027 bp distal
Rr666280	regulatory region 666280	280 bp distal
Rr666281	regulatory region 666281	138 bp proximal
Rr666282	regulatory region 666282	392 bp proximal
Rr666283	regulatory region 666283	1166 bp proximal
Tssr78279	transcription start site region 78279	1056 bp downstream
Tssr78280	transcription start site region 78280	998 bp downstream
Tssr78281	transcription start site region 78281	833 bp downstream