rs8253610 SNP Detail

Summary

• ID
  rs8253610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCCTGC CCCCCCCCGC
  CCCCCACGGG AACTCATAGC CCTTCCAGCC TGCCCCAGGC GATGCTCACA TTTTCCAGTG
  TTTAGATTTT ATCCACTTTA TTAATGAGGC GGGCAAGAGG CCCGGGTGAG GGTGTGGGGG
  TTTGCTCCTG CCCCGCTGAG AGGAGGGGGG TCACAGAGAC CAAACCAATT CAGAGAACCT
  Y
  AGTCCTTGGC GGGAAGGAGC TGGGCCCAGT TGCCCTGACT GTTGCCAGCA GTTTTGCCCA
  CTCAAGGCTC CCAGCCCCAG AGAGCAGACA TGCATGGGGT GGAGCAGCCC CTGGAGGCCA
  GTGAAGTGCG GGTGGAGGCG GCACGGAGCC GAGGAGCCGC CCCAGGAAGA GGGAGCGGCC
  TGCCGGGAGC CAGGGAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749434	Y07611_AN854_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253610					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1046 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1959 bp downstream
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	25 bp upstream
Rr666278	regulatory region 666278	1466 bp distal
Rr666279	regulatory region 666279	within coordinates
Rr666280	regulatory region 666280	36 bp proximal
Rr666281	regulatory region 666281	1200 bp proximal
Rr666282	regulatory region 666282	1454 bp proximal
Tssr78279	transcription start site region 78279	within coordinates
Tssr78280	transcription start site region 78280	54 bp upstream
Tssr78281	transcription start site region 78281	174 bp upstream