rs8253612 SNP Detail

Summary

• ID
  rs8253612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392779 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

    CNCCTGTA TCCATAGCTA TGTCTCACCT TCTGNCTTGA AAAGGGGCAC ACATGCAGCC
  M
  CTGTCAGCTT AGTCATAATG GGGAGTAAAC ACTGGATAGC ACTCACCATT GCTGACTGTA
  ACATCTATNC CCCCNCCCCC ATATGAAACT GATGCTTACC TCAGCACTGG GTGTAAATCT
  CACTGTCACT GTAAGTCTGT TCCCAGCCCC AGAGCACACC TCCTGATGTA GTCTCCCTTA
  AACCAATGCC CATGGACCCC GAGAACTTGT CCTGAGACAC ATAATCACAT CTCTAAGGCC
  TGTTTATCCT GAATNCCCCC CCCCCCAAAA AAAAAAAAAA ATACCCCAGA GACCCNTGCA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ
ss12749437	Y07611_AN855_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ
rs8253612					SNP	A	A	A	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392779 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1549 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1456 bp downstream
Pkn1	protein kinase N1	386 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	528 bp upstream
Rr666278	regulatory region 666278	963 bp distal
Rr666279	regulatory region 666279	38 bp proximal
Rr666280	regulatory region 666280	539 bp proximal
Rr666281	regulatory region 666281	1703 bp proximal
Rr666282	regulatory region 666282	1957 bp proximal
Tssr78279	transcription start site region 78279	484 bp upstream
Tssr78280	transcription start site region 78280	557 bp upstream
Tssr78281	transcription start site region 78281	677 bp upstream