rs8253615 SNP Detail

Summary

• ID
  rs8253615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392412 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

              CCNCCCNAA AAAAAAGAAA GAANACNCNA GAGACCCNTG CNCCCACTGA
  ACACAGCTCC CTGAAACTCA CTGCACCCAA GGCTTACCCA CAATAATCAC AGCTCTGGTT
  M
  AACCTGGNTA CCAACCACCC ACTACACATG GTCCCAGCTG CTCCCAGCAN ACATGCGAGA
  CCCCAGTATA ggacctgggc tacanttnag tgacagagca catccttagc atgtatgaag
  ccctgggttc tactatcagt actgaaaaTG GGCTTGTGAT CAGGGATAGC AAGTANCCAT
  CTGCAGGGCT TCT                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	NZB/BlNJ
ss12749440	Y07611_AN856_1	ROCHEBIO	RPAMM	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	NZB/BlNJ
rs8253615					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392412 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1916 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1089 bp downstream
Pkn1	protein kinase N1	753 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	895 bp upstream
Rr666278	regulatory region 666278	596 bp distal
Rr666279	regulatory region 666279	405 bp proximal
Rr666280	regulatory region 666280	906 bp proximal
Tssr78279	transcription start site region 78279	851 bp upstream
Tssr78280	transcription start site region 78280	924 bp upstream
Tssr78281	transcription start site region 78281	1044 bp upstream