rs8253616 SNP Detail

Summary

• ID
  rs8253616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392362 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         CCNCCCNAA AAAAAAGAAA GAANACNCNA GAGACCCNTG
  CNCCCACTGA ACACAGCTCC CTGAAACTCA CTGCACCCAA GGCTTACCCA CAATAATCAC
  AGCTCTGGTT NAACCTGGNT ACCAACCACC CACTACACAT GGTCCCAGCT GCTCCCAGCA
  R
  ACATGCGAGA CCCCAGTATA ggacctgggc tacanttnag tgacagagca catccttagc
  atgtatgaag ccctgggttc tactatcagt actgaaaaTG GGCTTGTGAT CAGGGATAGC
  AAGTANCCAT CTGCAGGGCT TCT                                        
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ
ss12749441	Y07611_AN856_2	ROCHEBIO	RPAMM	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ
rs8253616					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392362 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1966 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1039 bp downstream
Pkn1	protein kinase N1	803 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	945 bp upstream
Rr666278	regulatory region 666278	546 bp distal
Rr666279	regulatory region 666279	455 bp proximal
Rr666280	regulatory region 666280	956 bp proximal
Tssr78279	transcription start site region 78279	901 bp upstream
Tssr78280	transcription start site region 78280	974 bp upstream
Tssr78281	transcription start site region 78281	1094 bp upstream