rs8253617 SNP Detail

Summary

• ID
  rs8253617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392327 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCCC AGTATAGGAC CTGGGCTACA
  R
  TTCAGTGACA GAGCACATCC TTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SM/J
ss12749442	Y07611_AN856_3	ROCHEBIO	RPAMM	f	SNP				G	G			G	G					G	A	G
ss46208511	mCV23002205	ABI	CRAMUS_MOUSE	r	SNP	C	C	C				T		C
ss51971830	NES14985919	PERLEGEN	MM_PANEL2	r	SNP						C				T	C		C				T
ss145359587	ENSMUSSNP2590779	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C						C
ss322745394	CHEV_8_86189597	CHEVERUD	SCREENING_POP	r	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SM/J
rs8253617					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971830	NES14985919	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392327 () rs orientation: reverse

Symbol	Name	Function Class
Gipc1	GIPC PDZ domain containing family, member 1	1004 bp downstream
Pkn1	protein kinase N1	838 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	980 bp upstream
Rr666278	regulatory region 666278	511 bp distal
Rr666279	regulatory region 666279	490 bp proximal
Rr666280	regulatory region 666280	991 bp proximal
Tssr78279	transcription start site region 78279	936 bp upstream
Tssr78280	transcription start site region 78280	1009 bp upstream
Tssr78281	transcription start site region 78281	1129 bp upstream