rs8253622 SNP Detail

Summary

• ID
  rs8253622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84395260 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGGCG ATCATCGGGA CCTGCGGTCT
  Y
  TCGGAATCGT CGAGAGCGAC GCCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749464	Y07611_AN862_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253622					SNP	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84395260 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	within coordinates
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	1943 bp distal
Rr666280	regulatory region 666280	1196 bp distal
Rr666281	regulatory region 666281	757 bp distal
Rr666282	regulatory region 666282	503 bp distal
Rr666283	regulatory region 666283	250 bp proximal
Tssr78279	transcription start site region 78279	1972 bp downstream
Tssr78280	transcription start site region 78280	1914 bp downstream
Tssr78281	transcription start site region 78281	1749 bp downstream