rs8253623 SNP Detail

Summary

• ID
  rs8253623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394650 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                AGCGCCA GGGCGCCCGG GANCACATGG CCTGCTAGGT CGATGGCAAG
  CAGGCTGGCG ACGAACAACA GGAAGGTGGC AGCCGAGCGG CGCCGCCGCA TTCGGCCTGC
  AACCTGGGCC AGCAGCGCCA GCGCCAGCAC GTTGGACACA GCACCCAGCG TCATGGAGAA
  R
  ATAGGCAGCG CTGGTGATGT GCCATTATCG CCTGTTGGCA GCACCACAGA TGTATTGGGG
  AGCCTGGGTG TTGCGCACGT TGCTGCCTCA TCCGCTAGGC TCAGGTTAAG CCCGCAGGGG
  CTCATATCAG TGGCCAAGAG GGCTGCGTAG ATAAGNAAGA GGGCACAGTG AGGTAGGGTC
  CCAACCTTCT GT                                                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ
ss12749465	Y07611_AN863_1	ROCHEBIO	RPAMM	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ
rs8253623					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394650 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	within coordinates
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	1333 bp distal
Rr666280	regulatory region 666280	586 bp distal
Rr666281	regulatory region 666281	147 bp distal
Rr666282	regulatory region 666282	86 bp proximal
Rr666283	regulatory region 666283	860 bp proximal
Tssr78279	transcription start site region 78279	1362 bp downstream
Tssr78280	transcription start site region 78280	1304 bp downstream
Tssr78281	transcription start site region 78281	1139 bp downstream