rs8253627 SNP Detail

Summary

• ID
  rs8253627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393047 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTGG AGGAGTGTTG TCCTCATTGG
  R
  CTTGAGGGGT TGGGAGTTGC CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749469	Y07611_AN864_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253627					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393047 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1281 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1724 bp downstream
Pkn1	protein kinase N1	118 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	260 bp upstream
Rr666278	regulatory region 666278	1231 bp distal
Rr666279	regulatory region 666279	within coordinates
Rr666280	regulatory region 666280	271 bp proximal
Rr666281	regulatory region 666281	1435 bp proximal
Rr666282	regulatory region 666282	1689 bp proximal
Tssr78279	transcription start site region 78279	216 bp upstream
Tssr78280	transcription start site region 78280	289 bp upstream
Tssr78281	transcription start site region 78281	409 bp upstream