rs8253630 SNP Detail

Summary

• ID
  rs8253630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392966 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGCC TTTATGGTTG TCACAGTTGG
  R
  CAGAGGTGGG CAGCCTAGAC CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12749472	Y07611_AN864_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8253630					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392966 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1362 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1643 bp downstream
Pkn1	protein kinase N1	199 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	341 bp upstream
Rr666278	regulatory region 666278	1150 bp distal
Rr666279	regulatory region 666279	within coordinates
Rr666280	regulatory region 666280	352 bp proximal
Rr666281	regulatory region 666281	1516 bp proximal
Rr666282	regulatory region 666282	1770 bp proximal
Tssr78279	transcription start site region 78279	297 bp upstream
Tssr78280	transcription start site region 78280	370 bp upstream
Tssr78281	transcription start site region 78281	490 bp upstream