rs8254486 SNP Detail

Summary

• ID
  rs8254486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394166 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCTC CGTTTTCAGA AGTCTCCTTG
  R
  CTTGCCCTGG AACTGGCCAG GCTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
ss12750414	Y07611_AN132_2	ROCHEBIO	RPAMM	f	SNP	A			A	A	A	G	A	A		A	G	G	A					A	G	A				G
ss46239547	mCV23002395	ABI	CRAMUS_MOUSE	r	SNP			T		T							C		T
ss51971823	NES14985935	PERLEGEN	MM_PANEL2	r	SNP		T			T	T		T		T	T		C		C	T		C				T	C
ss145359611	ENSMUSSNP2893447	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		T									T
ss322745400	CHEV_8_86191436	CHEVERUD	SCREENING_POP	r	SNP																	T							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
rs8254486					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	A	G	A	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971823	NES14985935	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394166 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20651	CpG island 20651			162 bp proximal
Pkn1	protein kinase N1			mRNA-UTR
				Noncoding-Transcript-Variant
Ptger1	prostaglandin E receptor 1 (subtype EP1)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr666279	regulatory region 666279			849 bp distal
Rr666280	regulatory region 666280			102 bp distal
Rr666281	regulatory region 666281			316 bp proximal
Rr666282	regulatory region 666282			570 bp proximal
Rr666283	regulatory region 666283			1344 bp proximal
Tssr78279	transcription start site region 78279			878 bp downstream
Tssr78280	transcription start site region 78280			820 bp downstream
Tssr78281	transcription start site region 78281			655 bp downstream