rs8254487 SNP Detail

Summary

• ID
  rs8254487
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392860 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         TGGGCAGCC TAGACCAGGG CAACAGGGAG TCATCCTAGG
  TGAAGAGAGG TGGCTAAATG ACTCAGGGGA GCCAGGCTAT CATCTGTATC CTGCCTTATG
  S
  GGAGGTAGGC AATTCATAGG GCACCCTGCA TCCATAGCTA TGTCTCACCT TCTGTCTTGA
  AAAGGGGCAC ACATGCAGCC ACTGTCAGCT TAGTCATAAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12750421	Y07611_AN142_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	G	C	C	C	G	C		C	G		G
ss145359592	ENSMUSSNP2226363	ENSEMBL	ENSEMBL_Sanger	r	SNP			G
ss322745396	CHEV_8_86190130	CHEVERUD	SCREENING_POP	r	SNP											G			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8254487					SNP	C	C	C	C	G	C	C	C	G	C	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392860 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1468 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1537 bp downstream
Pkn1	protein kinase N1	305 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	447 bp upstream
Rr666278	regulatory region 666278	1044 bp distal
Rr666279	regulatory region 666279	within coordinates
Rr666280	regulatory region 666280	458 bp proximal
Rr666281	regulatory region 666281	1622 bp proximal
Rr666282	regulatory region 666282	1876 bp proximal
Tssr78279	transcription start site region 78279	403 bp upstream
Tssr78280	transcription start site region 78280	476 bp upstream
Tssr78281	transcription start site region 78281	596 bp upstream