rs8254488 SNP Detail

Summary

• ID
  rs8254488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392831 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTAG GCAATTCATA GGGCACCCTG
  Y
  ATCCATAGCT ATGTCTCACC TTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12750422	Y07611_AN142_2	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	C	T	T		T	C	C	T					T		C	T				C
ss51971829	NES14985921	PERLEGEN	MM_PANEL2	r	SNP		A		A	A		A		A	A		G	A	G	A		G		G			A	G			A
ss322745395	CHEV_8_86190101	CHEVERUD	SCREENING_POP	r	SNP																A								G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8254488					SNP	T	T	T	T	T	C	T	T	T	T	C	C	T	C	T	T	C	T	C	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971829	NES14985921	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392831 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1497 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1508 bp downstream
Pkn1	protein kinase N1	334 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	476 bp upstream
Rr666278	regulatory region 666278	1015 bp distal
Rr666279	regulatory region 666279	within coordinates
Rr666280	regulatory region 666280	487 bp proximal
Rr666281	regulatory region 666281	1651 bp proximal
Rr666282	regulatory region 666282	1905 bp proximal
Tssr78279	transcription start site region 78279	432 bp upstream
Tssr78280	transcription start site region 78280	505 bp upstream
Tssr78281	transcription start site region 78281	625 bp upstream