rs8254500 SNP Detail

Summary

• ID
  rs8254500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36060430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                  C
  TCATGTGATT CTGAAAGCTA GATTTGGAGA AAGGGGAACG AACCTTAACG ATTTTATGTG
  K
  GTGTTCTTCC CTTTCCCCTT CTCTGTGATT ATAACTGTCC CTATTGCCTT CTTCCTATCC
  ATCAGGNGCA GCATGCCAGC AAGCAAATCA CGGCAGATAA GCAATACAAG GGCATCATAG
  ACTGCGTGGT TCGTATCCCC AAGGAACAGG GAGTCCTGTC CTTCTGGCGT GGGAACCTGG
  CCAATGTCAT CAGATACTTC CCCACCCAGG CTCTCAACTT TGCCTTCAAA GATAAATACA
  AGCAGATCTT TCTGG                                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	C57BL/6J
ss12750440	AF240003_AN187_1	ROCHEBIO	RPAMM	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	C57BL/6J
rs8254500					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36060430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22665	CpG island 22665	1 bp distal
Rr690675	regulatory region 690675	1935 bp distal
Rr690676	regulatory region 690676	1889 bp distal
Rr690677	regulatory region 690677	1116 bp distal
Rr690678	regulatory region 690678	within coordinates
Rr690679	regulatory region 690679	464 bp distal
Rr690680	regulatory region 690680	371 bp distal
Rr690681	regulatory region 690681	160 bp distal
Rr690682	regulatory region 690682	80 bp distal
Slc25a5	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	within coordinates
Tssr5608	transcription start site region 5608	1049 bp downstream
Tssr160750	transcription start site region 160750	1167 bp downstream
Tssr160751	transcription start site region 160751	1137 bp downstream
Tssr160752	transcription start site region 160752	1124 bp downstream