GGGAA AGGGGGATCC TGGCTCCCGC R GTGCGCGGTC CGGGTGGGGG GGGTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
LG/J |
MRL/MpJ |
NZB/BlNJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss12750897 | U73744_DA268_1 | ROCHEBIO | RPAMM | f | SNP | A | A | A | A | G | A | A | G | A | A | A | A | ||
ss136338428 | ENSMUSSNP4901091 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | ||||||||||||
ss322919706 | CHEV_9_40609731 | CHEVERUD | SCREENING_POP | f | SNP | G | A | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129/Sv |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
LG/J |
MRL/MpJ |
NZB/BlNJ |
SM/J |
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rs8254849 | SNP | A | A | A | A | G | A | A | G | A | A | G | A | A | A |
Location: Chr9:40712944 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi21602 | CpG island 21602 | 1492 bp distal | ||||||
Cpgi21603 | CpG island 21603 | within coordinates | ||||||
Gm57042 | predicted gene, 57042 | 603 bp upstream | ||||||
Hspa8 | heat shock protein 8 | within coordinates | ||||||
Rr206240 | regulatory region 206240 | within coordinates | ||||||
Rr383256 | regulatory region 383256 | 99 bp downstream | ||||||
Snord14c | small nucleolar RNA, C/D box 14C | 1935 bp upstream | ||||||
Tssr84480 | transcription start site region 84480 | 1542 bp downstream | ||||||
Tssr84481 | transcription start site region 84481 | 364 bp downstream | ||||||
Tssr84482 | transcription start site region 84482 | 257 bp upstream | ||||||
Tssr84483 | transcription start site region 84483 | 718 bp upstream | ||||||
Tssr84484 | transcription start site region 84484 | 977 bp upstream | ||||||
Tssr88972 | transcription start site region 88972 | 862 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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