rs8254850 SNP Detail

Summary

• ID
  rs8254850
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40712965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTCAAAT ATAAGGCTTC TGCCCGGCGC CCACAGGGCA
  GGGCCCCCCG AGGTGGGAAA GGGGGATCCT GGCTCCCGCG GTGCGCGGTC CGGGTGGGGG
  K
  GGTTCGGGGG GCGCTCGGAG GTGGCCACGT GCTCCACCAT TGTCGCAGAC CTTTAGGACA
  GATGGTTCCT TGAGCCTTGG GCGGGCTGTG CCAGGCTTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J
ss12750898	U73744_DA268_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	G	T	T	G	G	T		G	T
ss136338431	ENSMUSSNP2336066	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss322919707	CHEV_9_40609752	CHEVERUD	SCREENING_POP	f	SNP											G			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J
rs8254850					SNP	T	T	T	T	G	T	T	G	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40712965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1513 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	841 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	120 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1914 bp upstream
Tssr84480	transcription start site region 84480	1563 bp downstream
Tssr84481	transcription start site region 84481	385 bp downstream
Tssr84482	transcription start site region 84482	236 bp upstream
Tssr84483	transcription start site region 84483	697 bp upstream
Tssr84484	transcription start site region 84484	956 bp upstream
Tssr88972	transcription start site region 88972	883 bp upstream