rs8254852 SNP Detail

Summary

• ID
  rs8254852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCGCC CTGGTCTTTT
  TATCCTGTCT GTGACTTCAA ATATAAGGCT TCTGCCCGGC GCCCACAGGG CAGGGCCCCC
  CGAGGTGGGA AAGGGGGATC CTGGCTCCCG CGGTGCGCGG TCCGGGTGGG GGGGGTTCGG
  GGGGCGCTCG GAGGTGGCCA CGTGCTCCAC CATTGTCGCA GACCTTTAGG ACAGATGGTT
  M
  CTTGAGCCTT GGGCGGGCTG TGCCAGGCTT GGCACAGACC ACCTATACTG CAGCACTGCT
  GCCACGAGCC TGCCGCGTGG CTTCAGGTGA TAGGTCTGGG TCACCAAGTC CAGACCCACT
  GCGGACTGGA TAAAAGCCGG AAAGCGAGTG CTTAGCCCCC CTCCTTTTTT TTTCTAATAG
  CAACCATGTC TAAGGGACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ
ss12750900	U73744_DA268_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ
rs8254852					SNP	C	C	C	C	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1581 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	909 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	188 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1846 bp upstream
Tssr84480	transcription start site region 84480	1631 bp downstream
Tssr84481	transcription start site region 84481	453 bp downstream
Tssr84482	transcription start site region 84482	168 bp upstream
Tssr84483	transcription start site region 84483	629 bp upstream
Tssr84484	transcription start site region 84484	888 bp upstream
Tssr88972	transcription start site region 88972	951 bp upstream