rs8254853 SNP Detail

Summary

• ID
  rs8254853
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCCTGGT CTTTTTATCC
  TGTCTGTGAC TTCAAATATA AGGCTTCTGC CCGGCGCCCA CAGGGCAGGG CCCCCCGAGG
  TGGGAAAGGG GGATCCTGGC TCCCGCGGTG CGCGGTCCGG GTGGGGGGGG TTCGGGGGGC
  GCTCGGAGGT GGCCACGTGC TCCACCATTG TCGCAGACCT TTAGGACAGA TGGTTCCTTG
  W
  GCCTTGGGCG GGCTGTGCCA GGCTTGGCAC AGACCACCTA TACTGCAGCA CTGCTGCCAC
  GAGCCTGCCG CGTGGCTTCA GGTGATAGGT CTGGGTCACC AAGTCCAGAC CCACTGCGGA
  CTGGATAAAA GCCGGAAAGC GAGTGCTTAG CCCCCCTCCT TTTTTTTTCT AATAGCAACC
  ATGTCTAAGG GACCTGCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ
ss12750901	U73744_DA268_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ
rs8254853					SNP	A	A	A	A	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1586 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	697 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	193 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1841 bp upstream
Tssr84480	transcription start site region 84480	1636 bp downstream
Tssr84481	transcription start site region 84481	458 bp downstream
Tssr84482	transcription start site region 84482	163 bp upstream
Tssr84483	transcription start site region 84483	624 bp upstream
Tssr84484	transcription start site region 84484	883 bp upstream
Tssr88972	transcription start site region 88972	956 bp upstream