rs8254854 SNP Detail

Summary

• ID
  rs8254854
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG CTGTGCCAGG CTTGGCACAG
  M
  CCACCTATAC TGCAGCACTG CTGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	LG/J	SM/J
ss12750902	U73744_DA268_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	A	C	A
ss322919708	CHEV_9_40609858	CHEVERUD	SCREENING_POP	f	SNP							A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	LG/J	SM/J
rs8254854					SNP	C	C	C	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1619 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	947 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	226 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1808 bp upstream
Tssr84480	transcription start site region 84480	1669 bp downstream
Tssr84481	transcription start site region 84481	491 bp downstream
Tssr84482	transcription start site region 84482	130 bp upstream
Tssr84483	transcription start site region 84483	591 bp upstream
Tssr84484	transcription start site region 84484	850 bp upstream
Tssr88972	transcription start site region 88972	989 bp upstream