rs8254855 SNP Detail

Summary

• ID
  rs8254855
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        AGGC TTCTGCCCGG CGCCCACAGG GCAGGGCCCC CCGAGGTGGG AAAGGGGGAT
  CCTGGCTCCC GCNGTGCGCG GTCCGGGTGG GGGNGGNTTC GGGGGGCGCT CGGAGGTGGC
  CACGTGCTCC ACCATTGTCG CAGACCTTTA GGACAGATGG TTNCTTGNGC CTTGGGCGGG
  CTGTGCCAGG CTTGGCACAG NCCACCTATA CTGCAGCACT GCTGCCNCGA GCCTGCCGCG
  K
  GGNTTCAGGT GATAGGTCTG GGTCACCAAG TCCAGACCCN CTGCGGACTG GATAAAAACC
  GGAAAGCGAG TGCTTAGCCC CCCTCTTTTT TTTTTCTAAT AGCAAC               
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C57BL/6J	NZB/BlNJ
ss12750903	U73744_DA268_7	ROCHEBIO	RPAMM	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C57BL/6J	NZB/BlNJ
rs8254855					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1659 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	770 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	266 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1768 bp upstream
Tssr84480	transcription start site region 84480	1709 bp downstream
Tssr84481	transcription start site region 84481	531 bp downstream
Tssr84482	transcription start site region 84482	90 bp upstream
Tssr84483	transcription start site region 84483	551 bp upstream
Tssr84484	transcription start site region 84484	810 bp upstream
Tssr88972	transcription start site region 88972	1029 bp upstream