rs8254856 SNP Detail

Summary

• ID
  rs8254856
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

     AGGCTTC TGCCCGGCGC CCACAGGGCA GGGCCCCCCG AGGTGGGAAA GGGGGATCCT
  GGCTCCCGCN GTGCGCGGTC CGGGTGGGGG NGGNTTCGGG GGGCGCTCGG AGGTGGCCAC
  GTGCTCCACC ATTGTCGCAG ACCTTTAGGA CAGATGGTTN CTTGNGCCTT GGGCGGGCTG
  TGCCAGGCTT GGCACAGNCC ACCTATACTG CAGCACTGCT GCCNCGAGCC TGCCGCGNGG
  S
  TTCAGGTGAT AGGTCTGGGT CACCAAGTCC AGACCCNCTG CGGACTGGAT AAAAACCGGA
  AAGCGAGTGC TTAGCCCCCC TCTTTTTTTT TTCTAATAGC AAC                  
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	NZB/BlNJ
ss12750904	U73744_DA268_8	ROCHEBIO	RPAMM	f	SNP	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	NZB/BlNJ
rs8254856					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1662 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	990 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	269 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1765 bp upstream
Tssr84480	transcription start site region 84480	1712 bp downstream
Tssr84481	transcription start site region 84481	534 bp downstream
Tssr84482	transcription start site region 84482	87 bp upstream
Tssr84483	transcription start site region 84483	548 bp upstream
Tssr84484	transcription start site region 84484	807 bp upstream
Tssr88972	transcription start site region 88972	1032 bp upstream