rs8254857 SNP Detail

Summary

• ID
  rs8254857
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                              AGGC TTCTGCCCGG CGCCCACAGG GCAGGGCCCC
  CCGAGGTGGG AAAGGGGGAT CCTGGCTCCC GCNGTGCGCG GTCCGGGTGG GGGNGGNTTC
  GGGGGGCGCT CGGAGGTGGC CACGTGCTCC ACCATTGTCG CAGACCTTTA GGACAGATGG
  TTNCTTGNGC CTTGGGCGGG CTGTGCCAGG CTTGGCACAG NCCACCTATA CTGCAGCACT
  GCTGCCNCGA GCCTGCCGCG NGGNTTCAGG TGATAGGTCT GGGTCACCAA GTCCAGACCC
  M
  CTGCGGACTG GATAAAAACC GGAAAGCGAG TGCTTAGCCC CCCTCTTTTT TTTTTCTAAT
  AGCAAC                                                           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J
ss12750905	U73744_DA268_9	ROCHEBIO	RPAMM	f	SNP	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J
rs8254857					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1699 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	810 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	306 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1728 bp upstream
Tssr84480	transcription start site region 84480	1749 bp downstream
Tssr84481	transcription start site region 84481	571 bp downstream
Tssr84482	transcription start site region 84482	50 bp upstream
Tssr84483	transcription start site region 84483	511 bp upstream
Tssr84484	transcription start site region 84484	770 bp upstream
Tssr88972	transcription start site region 88972	1069 bp upstream