rs8254876 SNP Detail

Summary

• ID
  rs8254876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                      ACTCCAT GTTGGCCTCT GTCNTTTNTT
  Y
  TGAAGCATCA GAGGGGTCTT CATCCTCAGC TTGGGGANAN NAGCCTGTCT GCATCTCACT
  CAGGCTGACA CCTCAGTTGN TTTTNGGATT TAGGGNTGGG AGGCTGGCTA AACATGTGGC
  ATCTGGAAAG ACAAATCCCC AAACCNGGGG GACCAGGGTG AGGTGAAAGG GGGAACCCNT
  TGGAAAGCNA AAAAAAAAAC TTTGGGGTGG GGCTGTGAGT GAAGGAGCCC ACAATTCCTC
  NCTCCCTCCC TTGTTCCAGG CT                                         
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	NZB/BlNJ	SPRET/EiJ
ss12750925	L04149_DA282_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	NZB/BlNJ	SPRET/EiJ
rs8254876					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139400 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	528 bp upstream
Cpgi21701	CpG island 21701	1844 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Rr678093	regulatory region 678093	635 bp distal
Rr678094	regulatory region 678094	201 bp proximal
Rr678095	regulatory region 678095	672 bp proximal
Rr678096	regulatory region 678096	1915 bp proximal
Tssr84839	transcription start site region 84839	245 bp upstream
Tssr84840	transcription start site region 84840	599 bp upstream
Tssr84841	transcription start site region 84841	731 bp upstream
Tssr84842	transcription start site region 84842	826 bp upstream
Tssr84843	transcription start site region 84843	849 bp upstream
Tssr84844	transcription start site region 84844	1008 bp upstream
Tssr84845	transcription start site region 84845	1060 bp upstream
Tssr84846	transcription start site region 84846	1099 bp upstream
Tssr84847	transcription start site region 84847	1720 bp upstream
Tssr84848	transcription start site region 84848	1807 bp upstream
Tssr84849	transcription start site region 84849	1899 bp upstream
Tssr84850	transcription start site region 84850	1939 bp upstream
Tssr84851	transcription start site region 84851	1983 bp upstream
Tssr89313	transcription start site region 89313	1832 bp downstream
Tssr89314	transcription start site region 89314	1892 bp downstream
Tssr89315	transcription start site region 89315	1906 bp downstream
Tssr89316	transcription start site region 89316	1934 bp downstream
Tssr89317	transcription start site region 89317	1946 bp downstream
Tssr89318	transcription start site region 89318	1968 bp downstream
Tssr89319	transcription start site region 89319	1982 bp downstream
Tssr89320	transcription start site region 89320	1991 bp downstream