rs8254878 SNP Detail

Summary

• ID
  rs8254878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCTCAC AACCATCTGT
  AAAGGAATCT GATTCCATCT TCTGGTGTGT CTGAAGACAG AGCGCTCATG TACCTAAGAT
  AAGGAAGAAA GGAAGGGAGG GAAGGAGGGA GGGAGACAAG GAAGGAGCTA ACAACTCCAT
  GTTGGCCTCT GTCATTTCTT CTGAAGCATC AGAGGGGTCT TCATCCTCAG CTTGGGGATA
  Y
  GAGCCTGTCT GCATCTCACT CAGGCTGACA CCTCAGTTGT TTTTGGATTT AGGGTTGGGA
  GGCTGGCTAA ACATGTGGCA TCTGGAAAGA CAAATCCCCA AACCTGGGGG ACCAGGGTGA
  GGTGAAAGGG GGAACCCCTT GGAAAGCAAA AAAAAAACTT TGGGGTGGGG CTGTGAGTGA
  AGGAGCCCAC AATTCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750927	L04149_DA282_5	ROCHEBIO	RPAMM	f	SNP	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254878					SNP	C	T	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139440 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	488 bp upstream
Cpgi21701	CpG island 21701	1804 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Rr678093	regulatory region 678093	675 bp distal
Rr678094	regulatory region 678094	161 bp proximal
Rr678095	regulatory region 678095	632 bp proximal
Rr678096	regulatory region 678096	1875 bp proximal
Tssr84839	transcription start site region 84839	205 bp upstream
Tssr84840	transcription start site region 84840	559 bp upstream
Tssr84841	transcription start site region 84841	691 bp upstream
Tssr84842	transcription start site region 84842	786 bp upstream
Tssr84843	transcription start site region 84843	809 bp upstream
Tssr84844	transcription start site region 84844	968 bp upstream
Tssr84845	transcription start site region 84845	1020 bp upstream
Tssr84846	transcription start site region 84846	1059 bp upstream
Tssr84847	transcription start site region 84847	1680 bp upstream
Tssr84848	transcription start site region 84848	1767 bp upstream
Tssr84849	transcription start site region 84849	1859 bp upstream
Tssr84850	transcription start site region 84850	1899 bp upstream
Tssr84851	transcription start site region 84851	1943 bp upstream
Tssr84852	transcription start site region 84852	1962 bp upstream
Tssr89313	transcription start site region 89313	1792 bp downstream
Tssr89314	transcription start site region 89314	1852 bp downstream
Tssr89315	transcription start site region 89315	1866 bp downstream
Tssr89316	transcription start site region 89316	1894 bp downstream
Tssr89317	transcription start site region 89317	1906 bp downstream
Tssr89318	transcription start site region 89318	1928 bp downstream
Tssr89319	transcription start site region 89319	1942 bp downstream
Tssr89320	transcription start site region 89320	1951 bp downstream
Tssr89321	transcription start site region 89321	1973 bp downstream