rs8254879 SNP Detail

Summary

• ID
  rs8254879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCACA ACCATCTGTA
  AAGGAATCTG ATTCCATCTT CTGGTGTGTC TGAAGACAGA GCGCTCATGT ACCTAAGATA
  AGGAAGAAAG GAAGGGAGGG AAGGAGGGAG GGAGACAAGG AAGGAGCTAA CAACTCCATG
  TTGGCCTCTG TCATTTCTTC TGAAGCATCA GAGGGGTCTT CATCCTCAGC TTGGGGATAT
  R
  AGCCTGTCTG CATCTCACTC AGGCTGACAC CTCAGTTGTT TTTGGATTTA GGGTTGGGAG
  GCTGGCTAAA CATGTGGCAT CTGGAAAGAC AAATCCCCAA ACCTGGGGGA CCAGGGTGAG
  GTGAAAGGGG GAACCCCTTG GAAAGCAAAA AAAAAACTTT GGGGTGGGGC TGTGAGTGAA
  GGAGCCCACA ATTCCTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750928	L04149_DA282_6	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254879					SNP	A	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139441 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	487 bp upstream
Cpgi21701	CpG island 21701	1803 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Rr678093	regulatory region 678093	676 bp distal
Rr678094	regulatory region 678094	160 bp proximal
Rr678095	regulatory region 678095	631 bp proximal
Rr678096	regulatory region 678096	1874 bp proximal
Tssr84839	transcription start site region 84839	204 bp upstream
Tssr84840	transcription start site region 84840	558 bp upstream
Tssr84841	transcription start site region 84841	690 bp upstream
Tssr84842	transcription start site region 84842	785 bp upstream
Tssr84843	transcription start site region 84843	808 bp upstream
Tssr84844	transcription start site region 84844	967 bp upstream
Tssr84845	transcription start site region 84845	1019 bp upstream
Tssr84846	transcription start site region 84846	1058 bp upstream
Tssr84847	transcription start site region 84847	1679 bp upstream
Tssr84848	transcription start site region 84848	1766 bp upstream
Tssr84849	transcription start site region 84849	1858 bp upstream
Tssr84850	transcription start site region 84850	1898 bp upstream
Tssr84851	transcription start site region 84851	1942 bp upstream
Tssr84852	transcription start site region 84852	1961 bp upstream
Tssr89313	transcription start site region 89313	1791 bp downstream
Tssr89314	transcription start site region 89314	1851 bp downstream
Tssr89315	transcription start site region 89315	1865 bp downstream
Tssr89316	transcription start site region 89316	1893 bp downstream
Tssr89317	transcription start site region 89317	1905 bp downstream
Tssr89318	transcription start site region 89318	1927 bp downstream
Tssr89319	transcription start site region 89319	1941 bp downstream
Tssr89320	transcription start site region 89320	1950 bp downstream
Tssr89321	transcription start site region 89321	1972 bp downstream