rs8254882 SNP Detail

Summary

• ID
  rs8254882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAGCGC TCATGTACCT
  AAGATAAGGA AGAAAGGAAG GGAGGGAAGG AGGGAGGGAG ACAAGGAAGG AGCTAACAAC
  TCCATGTTGG CCTCTGTCAT TTCTTCTGAA GCATCAGAGG GGTCTTCATC CTCAGCTTGG
  GGATATGAGC CTGTCTGCAT CTCACTCAGG CTGACACCTC AGTTGTTTTT GGATTTAGGG
  Y
  TGGGAGGCTG GCTAAACATG TGGCATCTGG AAAGACAAAT CCCCAAACCT GGGGGACCAG
  GGTGAGGTGA AAGGGGGAAC CCCTTGGAAA GCAAAAAAAA AACTTTGGGG TGGGGCTGTG
  AGTGAAGGAG CCCACAATTC CTCCCTCCCT CCCTTGTTCC AGGCTCAGAG GGCACTAGCA
  ACACAGAGGA GTCCAGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750931	L04149_DA282_9	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254882					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139495 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	433 bp upstream
Cpgi21701	CpG island 21701	1749 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Rr678093	regulatory region 678093	730 bp distal
Rr678094	regulatory region 678094	106 bp proximal
Rr678095	regulatory region 678095	577 bp proximal
Rr678096	regulatory region 678096	1820 bp proximal
Tssr84839	transcription start site region 84839	150 bp upstream
Tssr84840	transcription start site region 84840	504 bp upstream
Tssr84841	transcription start site region 84841	636 bp upstream
Tssr84842	transcription start site region 84842	731 bp upstream
Tssr84843	transcription start site region 84843	754 bp upstream
Tssr84844	transcription start site region 84844	913 bp upstream
Tssr84845	transcription start site region 84845	965 bp upstream
Tssr84846	transcription start site region 84846	1004 bp upstream
Tssr84847	transcription start site region 84847	1625 bp upstream
Tssr84848	transcription start site region 84848	1712 bp upstream
Tssr84849	transcription start site region 84849	1804 bp upstream
Tssr84850	transcription start site region 84850	1844 bp upstream
Tssr84851	transcription start site region 84851	1888 bp upstream
Tssr84852	transcription start site region 84852	1907 bp upstream
Tssr89313	transcription start site region 89313	1737 bp downstream
Tssr89314	transcription start site region 89314	1797 bp downstream
Tssr89315	transcription start site region 89315	1811 bp downstream
Tssr89316	transcription start site region 89316	1839 bp downstream
Tssr89317	transcription start site region 89317	1851 bp downstream
Tssr89318	transcription start site region 89318	1873 bp downstream
Tssr89319	transcription start site region 89319	1887 bp downstream
Tssr89320	transcription start site region 89320	1896 bp downstream
Tssr89321	transcription start site region 89321	1918 bp downstream
Tssr89322	transcription start site region 89322	1964 bp downstream