rs8254883 SNP Detail

Summary

• ID
  rs8254883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGGAG ACAAGGAAGG
  AGCTAACAAC TCCATGTTGG CCTCTGTCAT TTCTTCTGAA GCATCAGAGG GGTCTTCATC
  CTCAGCTTGG GGATATGAGC CTGTCTGCAT CTCACTCAGG CTGACACCTC AGTTGTTTTT
  GGATTTAGGG TTGGGAGGCT GGCTAAACAT GTGGCATCTG GAAAGACAAA TCCCCAAACC
  Y
  GGGGGACCAG GGTGAGGTGA AAGGGGGAAC CCCTTGGAAA GCAAAAAAAA AACTTTGGGG
  TGGGGCTGTG AGTGAAGGAG CCCACAATTC CTCCCTCCCT CCCTTGTTCC AGGCTCAGAG
  GGCACTAGCA ACACAGAGGA GTCCAGGAGT GGGCTCCATG AGACTATCTT GAAGAAGACA
  TACACCTCGG GATGGTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750932	L04149_DA282_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254883					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139545 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	383 bp upstream
Cpgi21701	CpG island 21701	1699 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Rr678093	regulatory region 678093	780 bp distal
Rr678094	regulatory region 678094	56 bp proximal
Rr678095	regulatory region 678095	527 bp proximal
Rr678096	regulatory region 678096	1770 bp proximal
Tssr84839	transcription start site region 84839	100 bp upstream
Tssr84840	transcription start site region 84840	454 bp upstream
Tssr84841	transcription start site region 84841	586 bp upstream
Tssr84842	transcription start site region 84842	681 bp upstream
Tssr84843	transcription start site region 84843	704 bp upstream
Tssr84844	transcription start site region 84844	863 bp upstream
Tssr84845	transcription start site region 84845	915 bp upstream
Tssr84846	transcription start site region 84846	954 bp upstream
Tssr84847	transcription start site region 84847	1575 bp upstream
Tssr84848	transcription start site region 84848	1662 bp upstream
Tssr84849	transcription start site region 84849	1754 bp upstream
Tssr84850	transcription start site region 84850	1794 bp upstream
Tssr84851	transcription start site region 84851	1838 bp upstream
Tssr84852	transcription start site region 84852	1857 bp upstream
Tssr84853	transcription start site region 84853	1955 bp upstream
Tssr84854	transcription start site region 84854	1985 bp upstream
Tssr89313	transcription start site region 89313	1687 bp downstream
Tssr89314	transcription start site region 89314	1747 bp downstream
Tssr89315	transcription start site region 89315	1761 bp downstream
Tssr89316	transcription start site region 89316	1789 bp downstream
Tssr89317	transcription start site region 89317	1801 bp downstream
Tssr89318	transcription start site region 89318	1823 bp downstream
Tssr89319	transcription start site region 89319	1837 bp downstream
Tssr89320	transcription start site region 89320	1846 bp downstream
Tssr89321	transcription start site region 89321	1868 bp downstream
Tssr89322	transcription start site region 89322	1914 bp downstream
Tssr89323	transcription start site region 89323	1979 bp downstream