rs8254884 SNP Detail

Summary

• ID
  rs8254884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                       ACTCCA TGTTGGCCTC TGTCNTTTNT
  TNTGAAGCAT CAGAGGGGTC TTCATCCTCA GCTTGGGGAN ANNAGCCTGT CTGCATCTCA
  CTCAGGCTGA CACCTCAGTT GNTTTTNGGA TTTAGGGNTG GGAGGCTGGC TAAACATGTG
  GCATCTGGAA AGACAAATCC CCAAACCNGG GGGACCAGGG TGAGGTGAAA GGGGGAACCC
  Y
  TTGGAAAGCN AAAAAAAAAA CTTTGGGGTG GGGCTGTGAG TGAAGGAGCC CACAATTCCT
  CNCTCCCTCC CTTGTTCCAG GCT                                        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750933	L04149_DA282_11	ROCHEBIO	RPAMM	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C
ss136424990	ENSMUSSNP576766	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254884					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139578 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	350 bp upstream
Cpgi21701	CpG island 21701	1666 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Rr678093	regulatory region 678093	813 bp distal
Rr678094	regulatory region 678094	23 bp proximal
Rr678095	regulatory region 678095	494 bp proximal
Rr678096	regulatory region 678096	1737 bp proximal
Tssr84839	transcription start site region 84839	67 bp upstream
Tssr84840	transcription start site region 84840	421 bp upstream
Tssr84841	transcription start site region 84841	553 bp upstream
Tssr84842	transcription start site region 84842	648 bp upstream
Tssr84843	transcription start site region 84843	671 bp upstream
Tssr84844	transcription start site region 84844	830 bp upstream
Tssr84845	transcription start site region 84845	882 bp upstream
Tssr84846	transcription start site region 84846	921 bp upstream
Tssr84847	transcription start site region 84847	1542 bp upstream
Tssr84848	transcription start site region 84848	1629 bp upstream
Tssr84849	transcription start site region 84849	1721 bp upstream
Tssr84850	transcription start site region 84850	1761 bp upstream
Tssr84851	transcription start site region 84851	1805 bp upstream
Tssr84852	transcription start site region 84852	1824 bp upstream
Tssr84853	transcription start site region 84853	1922 bp upstream
Tssr84854	transcription start site region 84854	1952 bp upstream
Tssr84855	transcription start site region 84855	1971 bp upstream
Tssr84856	transcription start site region 84856	1987 bp upstream
Tssr89313	transcription start site region 89313	1654 bp downstream
Tssr89314	transcription start site region 89314	1714 bp downstream
Tssr89315	transcription start site region 89315	1728 bp downstream
Tssr89316	transcription start site region 89316	1756 bp downstream
Tssr89317	transcription start site region 89317	1768 bp downstream
Tssr89318	transcription start site region 89318	1790 bp downstream
Tssr89319	transcription start site region 89319	1804 bp downstream
Tssr89320	transcription start site region 89320	1813 bp downstream
Tssr89321	transcription start site region 89321	1835 bp downstream
Tssr89322	transcription start site region 89322	1881 bp downstream
Tssr89323	transcription start site region 89323	1946 bp downstream
Tssr89324	transcription start site region 89324	1996 bp downstream