rs8254887 SNP Detail

Summary

• ID
  rs8254887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140057 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGAGG CGCTATGGAG CCAGAGCCAC
  Y
  GAAGGCAGGT AGCAGCACTT ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750936	L04149_DA283_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254887					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140057 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	1187 bp proximal
Gm67994	predicted gene, 67994	462 bp downstream
Rr195182	regulatory region 195182	within coordinates
Rr195183	regulatory region 195183	744 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	385 bp downstream
Tssr84840	transcription start site region 84840	45 bp downstream
Tssr84841	transcription start site region 84841	74 bp upstream
Tssr84842	transcription start site region 84842	169 bp upstream
Tssr84843	transcription start site region 84843	192 bp upstream
Tssr84844	transcription start site region 84844	351 bp upstream
Tssr84845	transcription start site region 84845	403 bp upstream
Tssr84846	transcription start site region 84846	442 bp upstream
Tssr84847	transcription start site region 84847	1063 bp upstream
Tssr84848	transcription start site region 84848	1150 bp upstream
Tssr84849	transcription start site region 84849	1242 bp upstream
Tssr84850	transcription start site region 84850	1282 bp upstream
Tssr84851	transcription start site region 84851	1326 bp upstream
Tssr84852	transcription start site region 84852	1345 bp upstream
Tssr84853	transcription start site region 84853	1443 bp upstream
Tssr84854	transcription start site region 84854	1473 bp upstream
Tssr84855	transcription start site region 84855	1492 bp upstream
Tssr84856	transcription start site region 84856	1508 bp upstream
Tssr84857	transcription start site region 84857	1626 bp upstream
Tssr84858	transcription start site region 84858	1645 bp upstream
Tssr89313	transcription start site region 89313	1175 bp downstream
Tssr89314	transcription start site region 89314	1235 bp downstream
Tssr89315	transcription start site region 89315	1249 bp downstream
Tssr89316	transcription start site region 89316	1277 bp downstream
Tssr89317	transcription start site region 89317	1289 bp downstream
Tssr89318	transcription start site region 89318	1311 bp downstream
Tssr89319	transcription start site region 89319	1325 bp downstream
Tssr89320	transcription start site region 89320	1334 bp downstream
Tssr89321	transcription start site region 89321	1356 bp downstream
Tssr89322	transcription start site region 89322	1402 bp downstream
Tssr89323	transcription start site region 89323	1467 bp downstream
Tssr89324	transcription start site region 89324	1517 bp downstream
Tssr89325	transcription start site region 89325	1541 bp downstream
Tssr89326	transcription start site region 89326	1581 bp downstream
Tssr89327	transcription start site region 89327	1702 bp downstream