rs8254888 SNP Detail

Summary

• ID
  rs8254888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139925 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACTGA TAAGCTCAGC CTGGCCCTGC
  Y
  ACTGCTTACT TTTGCTGGCG ATGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750938	L04149_DA283_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254888					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139925 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	3 bp upstream
Cpgi21701	CpG island 21701	1319 bp proximal
Gm67994	predicted gene, 67994	330 bp downstream
Rr195182	regulatory region 195182	76 bp proximal
Rr195183	regulatory region 195183	876 bp proximal
Rr206362	regulatory region 206362	75 bp proximal
Rr209245	regulatory region 209245	1911 bp distal
Tssr84839	transcription start site region 84839	253 bp downstream
Tssr84840	transcription start site region 84840	74 bp upstream
Tssr84841	transcription start site region 84841	206 bp upstream
Tssr84842	transcription start site region 84842	301 bp upstream
Tssr84843	transcription start site region 84843	324 bp upstream
Tssr84844	transcription start site region 84844	483 bp upstream
Tssr84845	transcription start site region 84845	535 bp upstream
Tssr84846	transcription start site region 84846	574 bp upstream
Tssr84847	transcription start site region 84847	1195 bp upstream
Tssr84848	transcription start site region 84848	1282 bp upstream
Tssr84849	transcription start site region 84849	1374 bp upstream
Tssr84850	transcription start site region 84850	1414 bp upstream
Tssr84851	transcription start site region 84851	1458 bp upstream
Tssr84852	transcription start site region 84852	1477 bp upstream
Tssr84853	transcription start site region 84853	1575 bp upstream
Tssr84854	transcription start site region 84854	1605 bp upstream
Tssr84855	transcription start site region 84855	1624 bp upstream
Tssr84856	transcription start site region 84856	1640 bp upstream
Tssr84857	transcription start site region 84857	1758 bp upstream
Tssr84858	transcription start site region 84858	1777 bp upstream
Tssr89313	transcription start site region 89313	1307 bp downstream
Tssr89314	transcription start site region 89314	1367 bp downstream
Tssr89315	transcription start site region 89315	1381 bp downstream
Tssr89316	transcription start site region 89316	1409 bp downstream
Tssr89317	transcription start site region 89317	1421 bp downstream
Tssr89318	transcription start site region 89318	1443 bp downstream
Tssr89319	transcription start site region 89319	1457 bp downstream
Tssr89320	transcription start site region 89320	1466 bp downstream
Tssr89321	transcription start site region 89321	1488 bp downstream
Tssr89322	transcription start site region 89322	1534 bp downstream
Tssr89323	transcription start site region 89323	1599 bp downstream
Tssr89324	transcription start site region 89324	1649 bp downstream
Tssr89325	transcription start site region 89325	1673 bp downstream
Tssr89326	transcription start site region 89326	1713 bp downstream
Tssr89327	transcription start site region 89327	1834 bp downstream