rs8254890 SNP Detail

Summary

• ID
  rs8254890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTGGGC ACCATGGCAG
  GTTCCAGTGG AGGACTAGGG ATGGGATTCA TCTGGCTGTT GGGTAACCAC AGCCCCTCAT
  TCAGCCTATG AGTGCCAAAT CCCTTTTCCT TGGTAACCCC CAGTACTGGT CAGACAGCAC
  CCAAAACAAA ACAAAACAAA ACAAAAAACA AAAAACGGGA CTGGCCTTGT AACCAGCACC
  R
  ACCACATCTG TGTTCTTGGT GCCTTCCGCC ATGTGTACAG AGGAATGTAA AGGGAAGGCA
  GTGAGTTAGA GGGTTGCATG TTCGGGGAAA CTAGGACCAT AGCAACTGCA CATTAGGGGA
  CAGGTGGCAC CCAGCTATCA TGTGCATGGA TCTGCAGACC AGGGGCAGCG CATGATGCCT
  GGGCTCGTCT CTCAGCCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12750940	L04149_DA285_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8254890					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140887 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	357 bp proximal
Gm67994	predicted gene, 67994	1292 bp downstream
Rr195182	regulatory region 195182	687 bp distal
Rr195183	regulatory region 195183	within coordinates
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1215 bp downstream
Tssr84840	transcription start site region 84840	875 bp downstream
Tssr84841	transcription start site region 84841	745 bp downstream
Tssr84842	transcription start site region 84842	643 bp downstream
Tssr84843	transcription start site region 84843	609 bp downstream
Tssr84844	transcription start site region 84844	435 bp downstream
Tssr84845	transcription start site region 84845	398 bp downstream
Tssr84846	transcription start site region 84846	343 bp downstream
Tssr84847	transcription start site region 84847	233 bp upstream
Tssr84848	transcription start site region 84848	320 bp upstream
Tssr84849	transcription start site region 84849	412 bp upstream
Tssr84850	transcription start site region 84850	452 bp upstream
Tssr84851	transcription start site region 84851	496 bp upstream
Tssr84852	transcription start site region 84852	515 bp upstream
Tssr84853	transcription start site region 84853	613 bp upstream
Tssr84854	transcription start site region 84854	643 bp upstream
Tssr84855	transcription start site region 84855	662 bp upstream
Tssr84856	transcription start site region 84856	678 bp upstream
Tssr84857	transcription start site region 84857	796 bp upstream
Tssr84858	transcription start site region 84858	815 bp upstream
Tssr89313	transcription start site region 89313	345 bp downstream
Tssr89314	transcription start site region 89314	405 bp downstream
Tssr89315	transcription start site region 89315	419 bp downstream
Tssr89316	transcription start site region 89316	447 bp downstream
Tssr89317	transcription start site region 89317	459 bp downstream
Tssr89318	transcription start site region 89318	481 bp downstream
Tssr89319	transcription start site region 89319	495 bp downstream
Tssr89320	transcription start site region 89320	504 bp downstream
Tssr89321	transcription start site region 89321	526 bp downstream
Tssr89322	transcription start site region 89322	572 bp downstream
Tssr89323	transcription start site region 89323	637 bp downstream
Tssr89324	transcription start site region 89324	687 bp downstream
Tssr89325	transcription start site region 89325	711 bp downstream
Tssr89326	transcription start site region 89326	751 bp downstream
Tssr89327	transcription start site region 89327	872 bp downstream