rs8254891 SNP Detail

Summary

• ID
  rs8254891
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGACTA GGGATGGGAT
  TCATCTGGCT GTTGGGTAAC CACAGCCCCT CATTCAGCCT ATGAGTGCCA AATCCCTTTT
  CCTTGGTAAC CCCCAGTACT GGTCAGACAG CACCCAAAAC AAAACAAAAC AAAACAAAAA
  ACAAAAAACG GGACTGGCCT TGTAACCAGC ACCGACCACA TCTGTGTTCT TGGTGCCTTC
  S
  GCCATGTGTA CAGAGGAATG TAAAGGGAAG GCAGTGAGTT AGAGGGTTGC ATGTTCGGGG
  AAACTAGGAC CATAGCAACT GCACATTAGG GGACAGGTGG CACCCAGCTA TCATGTGCAT
  GGATCTGCAG ACCAGGGGCA GCGCATGATG CCTGGGCTCG TCTCTCAGCC GCTCTCTTCC
  CCCTCTAGCC TGAATCTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12750941	L04149_DA285_2	ROCHEBIO	RPAMM	f	SNP	G			C	C	C	C	C	C		C	C	C	C				C		C	C			G
ss46370019	mCV24051239	ABI	CRAMUS_MOUSE	f	SNP		G	G		C							C		C
ss47697296	NES11321038	PERLEGEN	MM_PANEL2	f	SNP		G			C	C		C		C	C		C	C	C	G	G		C			C	G		C
ss136424996	ENSMUSSNP1917270	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		C									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8254891					SNP	G	G	G	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697296	NES11321038	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140914 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	330 bp proximal
Gm67994	predicted gene, 67994	1319 bp downstream
Rr195182	regulatory region 195182	714 bp distal
Rr195183	regulatory region 195183	within coordinates
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1242 bp downstream
Tssr84840	transcription start site region 84840	902 bp downstream
Tssr84841	transcription start site region 84841	772 bp downstream
Tssr84842	transcription start site region 84842	670 bp downstream
Tssr84843	transcription start site region 84843	636 bp downstream
Tssr84844	transcription start site region 84844	462 bp downstream
Tssr84845	transcription start site region 84845	425 bp downstream
Tssr84846	transcription start site region 84846	370 bp downstream
Tssr84847	transcription start site region 84847	206 bp upstream
Tssr84848	transcription start site region 84848	293 bp upstream
Tssr84849	transcription start site region 84849	385 bp upstream
Tssr84850	transcription start site region 84850	425 bp upstream
Tssr84851	transcription start site region 84851	469 bp upstream
Tssr84852	transcription start site region 84852	488 bp upstream
Tssr84853	transcription start site region 84853	586 bp upstream
Tssr84854	transcription start site region 84854	616 bp upstream
Tssr84855	transcription start site region 84855	635 bp upstream
Tssr84856	transcription start site region 84856	651 bp upstream
Tssr84857	transcription start site region 84857	769 bp upstream
Tssr84858	transcription start site region 84858	788 bp upstream
Tssr89313	transcription start site region 89313	318 bp downstream
Tssr89314	transcription start site region 89314	378 bp downstream
Tssr89315	transcription start site region 89315	392 bp downstream
Tssr89316	transcription start site region 89316	420 bp downstream
Tssr89317	transcription start site region 89317	432 bp downstream
Tssr89318	transcription start site region 89318	454 bp downstream
Tssr89319	transcription start site region 89319	468 bp downstream
Tssr89320	transcription start site region 89320	477 bp downstream
Tssr89321	transcription start site region 89321	499 bp downstream
Tssr89322	transcription start site region 89322	545 bp downstream
Tssr89323	transcription start site region 89323	610 bp downstream
Tssr89324	transcription start site region 89324	660 bp downstream
Tssr89325	transcription start site region 89325	684 bp downstream
Tssr89326	transcription start site region 89326	724 bp downstream
Tssr89327	transcription start site region 89327	845 bp downstream