rs8254900 SNP Detail

Summary

• ID
  rs8254900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACGGGA CTGGCCTTGT
  AACCAGCACC GACCACATCT GTGTTCTTGG TGCCTTCCGC CATGTGTACA GAGGAATGTA
  AAGGGAAGGC AGTGAGTTAG AGGGTTGCAT GTTCGGGGAA ACTAGGACCA TAGCAACTGC
  ACATTAGGGG ACAGGTGGCA CCCAGCTATC ATGTGCATGG ATCTGCAGAC CAGGGGCAGC
  R
  CATGATGCCT GGGCTCGTCT CTCAGCCGCT CTCTTCCCCC TCTAGCCTGA ATCTCCTGGA
  AAACTGGGAC ACTCTGGGTT CAACCGTTAG TCAGCTGCAG GAACGGCTGG GCCCATTGAC
  TCGGGACTTC TGGGATAACC TGGAGAAAGA AACAGATTGG GTGAGACAGG AGATGAACAA
  GGACCTAGAG GAAGTGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12750950	L04149_DA285_11	ROCHEBIO	RPAMM	f	SNP	A			G	G	G	G	G	G		G	G	G	G				G		G	G			G
ss46317026	mCV24051246	ABI	CRAMUS_MOUSE	f	SNP		A	A		G							G		G
ss47697298	NES11321040	PERLEGEN	MM_PANEL2	f	SNP		A			G	G		G		G	G		G	G	G	A	A		G			G	A		G
ss136424999	ENSMUSSNP6939698	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G									G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8254900					SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697298	NES11321040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141057 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	187 bp proximal
Gm67994	predicted gene, 67994	1462 bp downstream
Rr195182	regulatory region 195182	857 bp distal
Rr195183	regulatory region 195183	57 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1385 bp downstream
Tssr84840	transcription start site region 84840	1045 bp downstream
Tssr84841	transcription start site region 84841	915 bp downstream
Tssr84842	transcription start site region 84842	813 bp downstream
Tssr84843	transcription start site region 84843	779 bp downstream
Tssr84844	transcription start site region 84844	605 bp downstream
Tssr84845	transcription start site region 84845	568 bp downstream
Tssr84846	transcription start site region 84846	513 bp downstream
Tssr84847	transcription start site region 84847	63 bp upstream
Tssr84848	transcription start site region 84848	150 bp upstream
Tssr84849	transcription start site region 84849	242 bp upstream
Tssr84850	transcription start site region 84850	282 bp upstream
Tssr84851	transcription start site region 84851	326 bp upstream
Tssr84852	transcription start site region 84852	345 bp upstream
Tssr84853	transcription start site region 84853	443 bp upstream
Tssr84854	transcription start site region 84854	473 bp upstream
Tssr84855	transcription start site region 84855	492 bp upstream
Tssr84856	transcription start site region 84856	508 bp upstream
Tssr84857	transcription start site region 84857	626 bp upstream
Tssr84858	transcription start site region 84858	645 bp upstream
Tssr89313	transcription start site region 89313	175 bp downstream
Tssr89314	transcription start site region 89314	235 bp downstream
Tssr89315	transcription start site region 89315	249 bp downstream
Tssr89316	transcription start site region 89316	277 bp downstream
Tssr89317	transcription start site region 89317	289 bp downstream
Tssr89318	transcription start site region 89318	311 bp downstream
Tssr89319	transcription start site region 89319	325 bp downstream
Tssr89320	transcription start site region 89320	334 bp downstream
Tssr89321	transcription start site region 89321	356 bp downstream
Tssr89322	transcription start site region 89322	402 bp downstream
Tssr89323	transcription start site region 89323	467 bp downstream
Tssr89324	transcription start site region 89324	517 bp downstream
Tssr89325	transcription start site region 89325	541 bp downstream
Tssr89326	transcription start site region 89326	581 bp downstream
Tssr89327	transcription start site region 89327	702 bp downstream