rs8254901 SNP Detail

Summary

• ID
  rs8254901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACGCTT AAGACCCAAG
  TCCAGAGTGT GATCGACAAG GCCAGCGAGA CTCTGACTGC CCAGTGAGGT GCCCGCTTCC
  ACTCCCCACC CCCGCATTGG CTTTCTTACA ATAAACCTTT CCAAAATGGA ATAGCTTCTT
  TCTTTGGGGG ACATAGGGCG GGCGCTAAGG GGACATCAAG GGACGTGAGA ACATGGTGCC
  R
  CACTGGGGAT TCCTTTGTAC GCGACTACTC AGCTCTTAAC GCTCACTCAA GCTGGGCACC
  TGGCTGGTTC AGGGTATGAG ACAGAATCCC TTCCTAAGAA GGCTCCAAGG GAAATGGATG
  GCCAGGCAAA GCAACAAGGA ACCCCAAAAG GGCCCCACAG AGGCTCAGAA CACTAGTGCT
  GTAAACCAGG ATGAGAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750951	L04149_DA287_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254901					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141834 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	67 bp downstream
Cpgi21701	CpG island 21701	31 bp distal
Rr195182	regulatory region 195182	1634 bp distal
Rr195183	regulatory region 195183	834 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84840	transcription start site region 84840	1822 bp downstream
Tssr84841	transcription start site region 84841	1692 bp downstream
Tssr84842	transcription start site region 84842	1590 bp downstream
Tssr84843	transcription start site region 84843	1556 bp downstream
Tssr84844	transcription start site region 84844	1382 bp downstream
Tssr84845	transcription start site region 84845	1345 bp downstream
Tssr84846	transcription start site region 84846	1290 bp downstream
Tssr84847	transcription start site region 84847	628 bp downstream
Tssr84848	transcription start site region 84848	550 bp downstream
Tssr84849	transcription start site region 84849	514 bp downstream
Tssr84850	transcription start site region 84850	472 bp downstream
Tssr84851	transcription start site region 84851	437 bp downstream
Tssr84852	transcription start site region 84852	340 bp downstream
Tssr84853	transcription start site region 84853	306 bp downstream
Tssr84854	transcription start site region 84854	293 bp downstream
Tssr84855	transcription start site region 84855	273 bp downstream
Tssr84856	transcription start site region 84856	262 bp downstream
Tssr84857	transcription start site region 84857	140 bp downstream
Tssr84858	transcription start site region 84858	103 bp downstream
Tssr89313	transcription start site region 89313	561 bp upstream
Tssr89314	transcription start site region 89314	533 bp upstream
Tssr89315	transcription start site region 89315	510 bp upstream
Tssr89316	transcription start site region 89316	490 bp upstream
Tssr89317	transcription start site region 89317	481 bp upstream
Tssr89318	transcription start site region 89318	457 bp upstream
Tssr89319	transcription start site region 89319	447 bp upstream
Tssr89320	transcription start site region 89320	434 bp upstream
Tssr89321	transcription start site region 89321	409 bp upstream
Tssr89322	transcription start site region 89322	326 bp upstream
Tssr89323	transcription start site region 89323	274 bp upstream
Tssr89324	transcription start site region 89324	246 bp upstream
Tssr89325	transcription start site region 89325	221 bp upstream
Tssr89326	transcription start site region 89326	187 bp upstream
Tssr89327	transcription start site region 89327	73 bp upstream