rs8254902 SNP Detail

Summary

• ID
  rs8254902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGTGA TCGACAAGGC
  CAGCGAGACT CTGACTGCCC AGTGAGGTGC CCGCTTCCAC TCCCCACCCC CGCATTGGCT
  TTCTTACAAT AAACCTTTCC AAAATGGAAT AGCTTCTTTC TTTGGGGGAC ATAGGGCGGG
  CGCTAAGGGG ACATCAAGGG ACGTGAGAAC ATGGTGCCGC ACTGGGGATT CCTTTGTACG
  Y
  GACTACTCAG CTCTTAACGC TCACTCAAGC TGGGCACCTG GCTGGTTCAG GGTATGAGAC
  AGAATCCCTT CCTAAGAAGG CTCCAAGGGA AATGGATGGC CAGGCAAAGC AACAAGGAAC
  CCCAAAAGGG CCCCACAGAG GCTCAGAACA CTAGTGCTGT AAACCAGGAT GAGAGTGTCT
  GGCAATAGGA CTGGCTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750952	L04149_DA287_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254902					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141856 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	89 bp downstream
Cpgi21701	CpG island 21701	53 bp distal
Rr195182	regulatory region 195182	1656 bp distal
Rr195183	regulatory region 195183	856 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84840	transcription start site region 84840	1844 bp downstream
Tssr84841	transcription start site region 84841	1714 bp downstream
Tssr84842	transcription start site region 84842	1612 bp downstream
Tssr84843	transcription start site region 84843	1578 bp downstream
Tssr84844	transcription start site region 84844	1404 bp downstream
Tssr84845	transcription start site region 84845	1367 bp downstream
Tssr84846	transcription start site region 84846	1312 bp downstream
Tssr84847	transcription start site region 84847	650 bp downstream
Tssr84848	transcription start site region 84848	572 bp downstream
Tssr84849	transcription start site region 84849	536 bp downstream
Tssr84850	transcription start site region 84850	494 bp downstream
Tssr84851	transcription start site region 84851	459 bp downstream
Tssr84852	transcription start site region 84852	362 bp downstream
Tssr84853	transcription start site region 84853	328 bp downstream
Tssr84854	transcription start site region 84854	315 bp downstream
Tssr84855	transcription start site region 84855	295 bp downstream
Tssr84856	transcription start site region 84856	284 bp downstream
Tssr84857	transcription start site region 84857	162 bp downstream
Tssr84858	transcription start site region 84858	125 bp downstream
Tssr89313	transcription start site region 89313	583 bp upstream
Tssr89314	transcription start site region 89314	555 bp upstream
Tssr89315	transcription start site region 89315	532 bp upstream
Tssr89316	transcription start site region 89316	512 bp upstream
Tssr89317	transcription start site region 89317	503 bp upstream
Tssr89318	transcription start site region 89318	479 bp upstream
Tssr89319	transcription start site region 89319	469 bp upstream
Tssr89320	transcription start site region 89320	456 bp upstream
Tssr89321	transcription start site region 89321	431 bp upstream
Tssr89322	transcription start site region 89322	348 bp upstream
Tssr89323	transcription start site region 89323	296 bp upstream
Tssr89324	transcription start site region 89324	268 bp upstream
Tssr89325	transcription start site region 89325	243 bp upstream
Tssr89326	transcription start site region 89326	209 bp upstream
Tssr89327	transcription start site region 89327	95 bp upstream