rs8254903 SNP Detail

Summary

• ID
  rs8254903
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCGAGA CTCTGACTGC
  CCAGTGAGGT GCCCGCTTCC ACTCCCCACC CCCGCATTGG CTTTCTTACA ATAAACCTTT
  CCAAAATGGA ATAGCTTCTT TCTTTGGGGG ACATAGGGCG GGCGCTAAGG GGACATCAAG
  GGACGTGAGA ACATGGTGCC GCACTGGGGA TTCCTTTGTA CGCGACTACT CAGCTCTTAA
  M
  GCTCACTCAA GCTGGGCACC TGGCTGGTTC AGGGTATGAG ACAGAATCCC TTCCTAAGAA
  GGCTCCAAGG GAAATGGATG GCCAGGCAAA GCAACAAGGA ACCCCAAAAG GGCCCCACAG
  AGGCTCAGAA CACTAGTGCT GTAAACCAGG ATGAGAGTGT CTGGCAATAG GACTGGCTTT
  GAGACCGCTG GTTTCTTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750953	L04149_DA287_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254903					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141874 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	107 bp downstream
Cpgi21701	CpG island 21701	71 bp distal
Rr195182	regulatory region 195182	1674 bp distal
Rr195183	regulatory region 195183	874 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84840	transcription start site region 84840	1862 bp downstream
Tssr84841	transcription start site region 84841	1732 bp downstream
Tssr84842	transcription start site region 84842	1630 bp downstream
Tssr84843	transcription start site region 84843	1596 bp downstream
Tssr84844	transcription start site region 84844	1422 bp downstream
Tssr84845	transcription start site region 84845	1385 bp downstream
Tssr84846	transcription start site region 84846	1330 bp downstream
Tssr84847	transcription start site region 84847	668 bp downstream
Tssr84848	transcription start site region 84848	590 bp downstream
Tssr84849	transcription start site region 84849	554 bp downstream
Tssr84850	transcription start site region 84850	512 bp downstream
Tssr84851	transcription start site region 84851	477 bp downstream
Tssr84852	transcription start site region 84852	380 bp downstream
Tssr84853	transcription start site region 84853	346 bp downstream
Tssr84854	transcription start site region 84854	333 bp downstream
Tssr84855	transcription start site region 84855	313 bp downstream
Tssr84856	transcription start site region 84856	302 bp downstream
Tssr84857	transcription start site region 84857	180 bp downstream
Tssr84858	transcription start site region 84858	143 bp downstream
Tssr89313	transcription start site region 89313	601 bp upstream
Tssr89314	transcription start site region 89314	573 bp upstream
Tssr89315	transcription start site region 89315	550 bp upstream
Tssr89316	transcription start site region 89316	530 bp upstream
Tssr89317	transcription start site region 89317	521 bp upstream
Tssr89318	transcription start site region 89318	497 bp upstream
Tssr89319	transcription start site region 89319	487 bp upstream
Tssr89320	transcription start site region 89320	474 bp upstream
Tssr89321	transcription start site region 89321	449 bp upstream
Tssr89322	transcription start site region 89322	366 bp upstream
Tssr89323	transcription start site region 89323	314 bp upstream
Tssr89324	transcription start site region 89324	286 bp upstream
Tssr89325	transcription start site region 89325	261 bp upstream
Tssr89326	transcription start site region 89326	227 bp upstream
Tssr89327	transcription start site region 89327	113 bp upstream