rs8254904 SNP Detail

Summary

• ID
  rs8254904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATCAAG GGACGTGAGA
  ACATGGTGCC GCACTGGGGA TTCCTTTGTA CGCGACTACT CAGCTCTTAA CGCTCACTCA
  AGCTGGGCAC CTGGCTGGTT CAGGGTATGA GACAGAATCC CTTCCTAAGA AGGCTCCAAG
  GGAAATGGAT GGCCAGGCAA AGCAACAAGG AACCCCAAAA GGGCCCCACA GAGGCTCAGA
  R
  CACTAGTGCT GTAAACCAGG ATGAGAGTGT CTGGCAATAG GACTGGCTTT GAGACCGCTG
  GTTTCTTGTG CTAGCCGAGT TTCCAGGTGG GGTCCAGAGG GTGCAGGACG GGAGCCTCTT
  CCACTCCCTA GAGCCAGGAT TCCTTCAGGA GCCAGGAAGA TTGGAGTTAT TGGGTGGGTG
  CTAATAAAAA GCCTGGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12750954	L04149_DA287_4	ROCHEBIO	RPAMM	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8254904					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142004 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	237 bp downstream
Cpgi21701	CpG island 21701	201 bp distal
Rr195182	regulatory region 195182	1804 bp distal
Rr195183	regulatory region 195183	1004 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84840	transcription start site region 84840	1992 bp downstream
Tssr84841	transcription start site region 84841	1862 bp downstream
Tssr84842	transcription start site region 84842	1760 bp downstream
Tssr84843	transcription start site region 84843	1726 bp downstream
Tssr84844	transcription start site region 84844	1552 bp downstream
Tssr84845	transcription start site region 84845	1515 bp downstream
Tssr84846	transcription start site region 84846	1460 bp downstream
Tssr84847	transcription start site region 84847	798 bp downstream
Tssr84848	transcription start site region 84848	720 bp downstream
Tssr84849	transcription start site region 84849	684 bp downstream
Tssr84850	transcription start site region 84850	642 bp downstream
Tssr84851	transcription start site region 84851	607 bp downstream
Tssr84852	transcription start site region 84852	510 bp downstream
Tssr84853	transcription start site region 84853	476 bp downstream
Tssr84854	transcription start site region 84854	463 bp downstream
Tssr84855	transcription start site region 84855	443 bp downstream
Tssr84856	transcription start site region 84856	432 bp downstream
Tssr84857	transcription start site region 84857	310 bp downstream
Tssr84858	transcription start site region 84858	273 bp downstream
Tssr89313	transcription start site region 89313	731 bp upstream
Tssr89314	transcription start site region 89314	703 bp upstream
Tssr89315	transcription start site region 89315	680 bp upstream
Tssr89316	transcription start site region 89316	660 bp upstream
Tssr89317	transcription start site region 89317	651 bp upstream
Tssr89318	transcription start site region 89318	627 bp upstream
Tssr89319	transcription start site region 89319	617 bp upstream
Tssr89320	transcription start site region 89320	604 bp upstream
Tssr89321	transcription start site region 89321	579 bp upstream
Tssr89322	transcription start site region 89322	496 bp upstream
Tssr89323	transcription start site region 89323	444 bp upstream
Tssr89324	transcription start site region 89324	416 bp upstream
Tssr89325	transcription start site region 89325	391 bp upstream
Tssr89326	transcription start site region 89326	357 bp upstream
Tssr89327	transcription start site region 89327	243 bp upstream