rs8254905 SNP Detail

Summary

• ID
  rs8254905
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCGCAC TGGGGATTCC
  TTTGTACGCG ACTACTCAGC TCTTAACGCT CACTCAAGCT GGGCACCTGG CTGGTTCAGG
  GTATGAGACA GAATCCCTTC CTAAGAAGGC TCCAAGGGAA ATGGATGGCC AGGCAAAGCA
  ACAAGGAACC CCAAAAGGGC CCCACAGAGG CTCAGAACAC TAGTGCTGTA AACCAGGATG
  R
  GAGTGTCTGG CAATAGGACT GGCTTTGAGA CCGCTGGTTT CTTGTGCTAG CCGAGTTTCC
  AGGTGGGGTC CAGAGGGTGC AGGACGGGAG CCTCTTCCAC TCCCTAGAGC CAGGATTCCT
  TCAGGAGCCA GGAAGATTGG AGTTATTGGG TGGGTGCTAA TAAAAAGCCT GGAGCTGAAC
  CCGATCTCGG TAAACAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12750955	L04149_DA287_5	ROCHEBIO	RPAMM	f	SNP	G		A	A	A	A	A	A		A	A	G	A				A		A	A			G
ss47697302	NES11321043	PERLEGEN	MM_PANEL2	f	SNP		G		A	A		A		A	A		G	A	A	G	G		A			A	G		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8254905					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697302	NES11321043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142028 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	261 bp downstream
Cpgi21701	CpG island 21701	225 bp distal
Rr195182	regulatory region 195182	1828 bp distal
Rr195183	regulatory region 195183	1028 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84841	transcription start site region 84841	1886 bp downstream
Tssr84842	transcription start site region 84842	1784 bp downstream
Tssr84843	transcription start site region 84843	1750 bp downstream
Tssr84844	transcription start site region 84844	1576 bp downstream
Tssr84845	transcription start site region 84845	1539 bp downstream
Tssr84846	transcription start site region 84846	1484 bp downstream
Tssr84847	transcription start site region 84847	822 bp downstream
Tssr84848	transcription start site region 84848	744 bp downstream
Tssr84849	transcription start site region 84849	708 bp downstream
Tssr84850	transcription start site region 84850	666 bp downstream
Tssr84851	transcription start site region 84851	631 bp downstream
Tssr84852	transcription start site region 84852	534 bp downstream
Tssr84853	transcription start site region 84853	500 bp downstream
Tssr84854	transcription start site region 84854	487 bp downstream
Tssr84855	transcription start site region 84855	467 bp downstream
Tssr84856	transcription start site region 84856	456 bp downstream
Tssr84857	transcription start site region 84857	334 bp downstream
Tssr84858	transcription start site region 84858	297 bp downstream
Tssr89313	transcription start site region 89313	755 bp upstream
Tssr89314	transcription start site region 89314	727 bp upstream
Tssr89315	transcription start site region 89315	704 bp upstream
Tssr89316	transcription start site region 89316	684 bp upstream
Tssr89317	transcription start site region 89317	675 bp upstream
Tssr89318	transcription start site region 89318	651 bp upstream
Tssr89319	transcription start site region 89319	641 bp upstream
Tssr89320	transcription start site region 89320	628 bp upstream
Tssr89321	transcription start site region 89321	603 bp upstream
Tssr89322	transcription start site region 89322	520 bp upstream
Tssr89323	transcription start site region 89323	468 bp upstream
Tssr89324	transcription start site region 89324	440 bp upstream
Tssr89325	transcription start site region 89325	415 bp upstream
Tssr89326	transcription start site region 89326	381 bp upstream
Tssr89327	transcription start site region 89327	267 bp upstream