rs8254906 SNP Detail

Summary

• ID
  rs8254906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGAAG GCTCCAAGGG
  AAATGGATGG CCAGGCAAAG CAACAAGGAA CCCCAAAAGG GCCCCACAGA GGCTCAGAAC
  ACTAGTGCTG TAAACCAGGA TGAGAGTGTC TGGCAATAGG ACTGGCTTTG AGACCGCTGG
  TTTCTTGTGC TAGCCGAGTT TCCAGGTGGG GTCCAGAGGG TGCAGGACGG GAGCCTCTTC
  S
  ACTCCCTAGA GCCAGGATTC CTTCAGGAGC CAGGAAGATT GGAGTTATTG GGTGGGTGCT
  AATAAAAAGC CTGGAGCTGA ACCCGATCTC GGTAAACAAT TCCCTTTGAT CTTTCCCTCC
  GGTGCACCCA CACAGTGTGC TGAAAGGGTC AAGGCTGCAG CTACTCTACC TGACAGTTGG
  ATACAAAAAC AAACAAACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss12750956	L04149_DA288_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs8254906					SNP	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142126 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	359 bp downstream
Cpgi21701	CpG island 21701	323 bp distal
Rr195182	regulatory region 195182	1926 bp distal
Rr195183	regulatory region 195183	1126 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84841	transcription start site region 84841	1984 bp downstream
Tssr84842	transcription start site region 84842	1882 bp downstream
Tssr84843	transcription start site region 84843	1848 bp downstream
Tssr84844	transcription start site region 84844	1674 bp downstream
Tssr84845	transcription start site region 84845	1637 bp downstream
Tssr84846	transcription start site region 84846	1582 bp downstream
Tssr84847	transcription start site region 84847	920 bp downstream
Tssr84848	transcription start site region 84848	842 bp downstream
Tssr84849	transcription start site region 84849	806 bp downstream
Tssr84850	transcription start site region 84850	764 bp downstream
Tssr84851	transcription start site region 84851	729 bp downstream
Tssr84852	transcription start site region 84852	632 bp downstream
Tssr84853	transcription start site region 84853	598 bp downstream
Tssr84854	transcription start site region 84854	585 bp downstream
Tssr84855	transcription start site region 84855	565 bp downstream
Tssr84856	transcription start site region 84856	554 bp downstream
Tssr84857	transcription start site region 84857	432 bp downstream
Tssr84858	transcription start site region 84858	395 bp downstream
Tssr89313	transcription start site region 89313	853 bp upstream
Tssr89314	transcription start site region 89314	825 bp upstream
Tssr89315	transcription start site region 89315	802 bp upstream
Tssr89316	transcription start site region 89316	782 bp upstream
Tssr89317	transcription start site region 89317	773 bp upstream
Tssr89318	transcription start site region 89318	749 bp upstream
Tssr89319	transcription start site region 89319	739 bp upstream
Tssr89320	transcription start site region 89320	726 bp upstream
Tssr89321	transcription start site region 89321	701 bp upstream
Tssr89322	transcription start site region 89322	618 bp upstream
Tssr89323	transcription start site region 89323	566 bp upstream
Tssr89324	transcription start site region 89324	538 bp upstream
Tssr89325	transcription start site region 89325	513 bp upstream
Tssr89326	transcription start site region 89326	479 bp upstream
Tssr89327	transcription start site region 89327	365 bp upstream