rs8254908 SNP Detail

Summary

• ID
  rs8254908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGATGA GAGTGTCTGG
  CAATAGGACT GGCTTTGAGA CCGCTGGTTT CTTGTGCTAG CCGAGTTTCC AGGTGGGGTC
  CAGAGGGTGC AGGACGGGAG CCTCTTCCAC TCCCTAGAGC CAGGATTCCT TCAGGAGCCA
  GGAAGATTGG AGTTATTGGG TGGGTGCTAA TAAAAAGCCT GGAGCTGAAC CCGATCTCGG
  Y
  AAACAATTCC CTTTGATCTT TCCCTCCGGT GCACCCACAC AGTGTGCTGA AAGGGTCAAG
  GCTGCAGCTA CTCTACCTGA CAGTTGGATA CAAAAACAAA CAAACAAACA AACACCCCTC
  TCCATGATGC TGGTGACCAC ACATTTACTA GAGAGGCCTT CATATCCATC TCTAAATCCT
  GAAGGATGGC CTTTAAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12750958	L04149_DA288_3	ROCHEBIO	RPAMM	f	SNP		T			T		T		T	T		T				T		T			C
ss47697304	NES11321046	PERLEGEN	MM_PANEL2	f	SNP	C		T	T		T		T	T		T	T	T	C	C		T		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8254908					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697304	NES11321046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142219 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	452 bp downstream
Cpgi21701	CpG island 21701	416 bp distal
Rr195183	regulatory region 195183	1219 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84842	transcription start site region 84842	1975 bp downstream
Tssr84843	transcription start site region 84843	1941 bp downstream
Tssr84844	transcription start site region 84844	1767 bp downstream
Tssr84845	transcription start site region 84845	1730 bp downstream
Tssr84846	transcription start site region 84846	1675 bp downstream
Tssr84847	transcription start site region 84847	1013 bp downstream
Tssr84848	transcription start site region 84848	935 bp downstream
Tssr84849	transcription start site region 84849	899 bp downstream
Tssr84850	transcription start site region 84850	857 bp downstream
Tssr84851	transcription start site region 84851	822 bp downstream
Tssr84852	transcription start site region 84852	725 bp downstream
Tssr84853	transcription start site region 84853	691 bp downstream
Tssr84854	transcription start site region 84854	678 bp downstream
Tssr84855	transcription start site region 84855	658 bp downstream
Tssr84856	transcription start site region 84856	647 bp downstream
Tssr84857	transcription start site region 84857	525 bp downstream
Tssr84858	transcription start site region 84858	488 bp downstream
Tssr89313	transcription start site region 89313	946 bp upstream
Tssr89314	transcription start site region 89314	918 bp upstream
Tssr89315	transcription start site region 89315	895 bp upstream
Tssr89316	transcription start site region 89316	875 bp upstream
Tssr89317	transcription start site region 89317	866 bp upstream
Tssr89318	transcription start site region 89318	842 bp upstream
Tssr89319	transcription start site region 89319	832 bp upstream
Tssr89320	transcription start site region 89320	819 bp upstream
Tssr89321	transcription start site region 89321	794 bp upstream
Tssr89322	transcription start site region 89322	711 bp upstream
Tssr89323	transcription start site region 89323	659 bp upstream
Tssr89324	transcription start site region 89324	631 bp upstream
Tssr89325	transcription start site region 89325	606 bp upstream
Tssr89326	transcription start site region 89326	572 bp upstream
Tssr89327	transcription start site region 89327	458 bp upstream