rs8254909 SNP Detail

Summary

• ID
  rs8254909
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                TTT
  TTCTTGTGCT AGCCGAGTTC CCAGGTGGGG TCCAGAGGGT GCAGGACGGG AGCCTCTTCN
  ACTCCCTAGA GCCAGGATTC CTTCAGGAGC CAGGAAGATT GGAGTTATTG GGTGGGTGCT
  AATAAAAAGC CTGGAGCTGA ACCCGNTCTC GGNAAACAAT TCCCTTTGAT CTTTCCCTCC
  S
  GTGCACCCAC ANNGTGTGCT GAAAGGGTCA AGGCTGCAGC TACTCTACCT GACAGTTGGN
  TACAAAAACA AACAAACAAA CANNNNCCCC TCTCCNTGAT GCTGGTGACC ACACATTTAC
  TAGAGAGGCC TTCATATCCA TCTCTAAATC CTGAAGGATG GCCTTTAAGT CCACACCAGT
  TGGGGAAGCT GAGCTGGGAG GTCTGAAGTT AGTCACTGCA GAAAAGGTGG GTCAGGATGT
  GCCGTTCC                                                         
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12750959	L04149_DA288_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8254909					SNP	G	G	G	G	G	C	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142247 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	480 bp downstream
Cpgi21701	CpG island 21701	444 bp distal
Rr195183	regulatory region 195183	1247 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84843	transcription start site region 84843	1969 bp downstream
Tssr84844	transcription start site region 84844	1795 bp downstream
Tssr84845	transcription start site region 84845	1758 bp downstream
Tssr84846	transcription start site region 84846	1703 bp downstream
Tssr84847	transcription start site region 84847	1041 bp downstream
Tssr84848	transcription start site region 84848	963 bp downstream
Tssr84849	transcription start site region 84849	927 bp downstream
Tssr84850	transcription start site region 84850	885 bp downstream
Tssr84851	transcription start site region 84851	850 bp downstream
Tssr84852	transcription start site region 84852	753 bp downstream
Tssr84853	transcription start site region 84853	719 bp downstream
Tssr84854	transcription start site region 84854	706 bp downstream
Tssr84855	transcription start site region 84855	686 bp downstream
Tssr84856	transcription start site region 84856	675 bp downstream
Tssr84857	transcription start site region 84857	553 bp downstream
Tssr84858	transcription start site region 84858	516 bp downstream
Tssr89313	transcription start site region 89313	974 bp upstream
Tssr89314	transcription start site region 89314	946 bp upstream
Tssr89315	transcription start site region 89315	923 bp upstream
Tssr89316	transcription start site region 89316	903 bp upstream
Tssr89317	transcription start site region 89317	894 bp upstream
Tssr89318	transcription start site region 89318	870 bp upstream
Tssr89319	transcription start site region 89319	860 bp upstream
Tssr89320	transcription start site region 89320	847 bp upstream
Tssr89321	transcription start site region 89321	822 bp upstream
Tssr89322	transcription start site region 89322	739 bp upstream
Tssr89323	transcription start site region 89323	687 bp upstream
Tssr89324	transcription start site region 89324	659 bp upstream
Tssr89325	transcription start site region 89325	634 bp upstream
Tssr89326	transcription start site region 89326	600 bp upstream
Tssr89327	transcription start site region 89327	486 bp upstream