rs8254912 SNP Detail

Summary

• ID
  rs8254912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG CTACTCTACC TGACAGTTGG
  R
  TACAAAAACA AACAAACAAA CAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12750962	L04149_DA288_7	ROCHEBIO	RPAMM	f	SNP		G	G	A	G		G	A		G				G		A				G
ss47697306	NES11321050	PERLEGEN	MM_PANEL2	f	SNP	G		G	A		A	G		G	G	G		G		G		A	G			A
ss136425008	ENSMUSSNP2251193	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss322944007	CHEV_9_46039092	CHEVERUD	SCREENING_POP	f	SNP												G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8254912					SNP	G	G	G	A	G	A	G	A	G	G	G	G	G	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697306	NES11321050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142307 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	540 bp downstream
Cpgi21701	CpG island 21701	504 bp distal
Rr195183	regulatory region 195183	1307 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84844	transcription start site region 84844	1855 bp downstream
Tssr84845	transcription start site region 84845	1818 bp downstream
Tssr84846	transcription start site region 84846	1763 bp downstream
Tssr84847	transcription start site region 84847	1101 bp downstream
Tssr84848	transcription start site region 84848	1023 bp downstream
Tssr84849	transcription start site region 84849	987 bp downstream
Tssr84850	transcription start site region 84850	945 bp downstream
Tssr84851	transcription start site region 84851	910 bp downstream
Tssr84852	transcription start site region 84852	813 bp downstream
Tssr84853	transcription start site region 84853	779 bp downstream
Tssr84854	transcription start site region 84854	766 bp downstream
Tssr84855	transcription start site region 84855	746 bp downstream
Tssr84856	transcription start site region 84856	735 bp downstream
Tssr84857	transcription start site region 84857	613 bp downstream
Tssr84858	transcription start site region 84858	576 bp downstream
Tssr89313	transcription start site region 89313	1034 bp upstream
Tssr89314	transcription start site region 89314	1006 bp upstream
Tssr89315	transcription start site region 89315	983 bp upstream
Tssr89316	transcription start site region 89316	963 bp upstream
Tssr89317	transcription start site region 89317	954 bp upstream
Tssr89318	transcription start site region 89318	930 bp upstream
Tssr89319	transcription start site region 89319	920 bp upstream
Tssr89320	transcription start site region 89320	907 bp upstream
Tssr89321	transcription start site region 89321	882 bp upstream
Tssr89322	transcription start site region 89322	799 bp upstream
Tssr89323	transcription start site region 89323	747 bp upstream
Tssr89324	transcription start site region 89324	719 bp upstream
Tssr89325	transcription start site region 89325	694 bp upstream
Tssr89326	transcription start site region 89326	660 bp upstream
Tssr89327	transcription start site region 89327	546 bp upstream