rs8254917 SNP Detail

Summary

• ID
  rs8254917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTTCAG GAGCCAGGAA
  GATTGGAGTT ATTGGGTGGG TGCTAATAAA AAGCCTGGAG CTGAACCCGA TCTCGGTAAA
  CAATTCCCTT TGATCTTTCC CTCCGGTGCA CCCACACAGT GTGCTGAAAG GGTCAAGGCT
  GCAGCTACTC TACCTGACAG TTGGATACAA AAACAAACAA ACAAACAAAC ACCCCTCTCC
  R
  TGATGCTGGT GACCACACAT TTACTAGAGA GGCCTTCATA TCCATCTCTA AATCCTGAAG
  GATGGCCTTT AAGTCCACAC CAGTTGGGGA AGCTGAGCTG GGAGGTCTGA AGTTAGTCAC
  TGCAGAAAAG GTGGGTCAGG ATGTGCCGTT CCATTTTAAA ACAAAACAAA AACAAAACAA
  ACAAACAAAA AAACCCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12750967	L04149_DA288_12	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8254917					SNP	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142343 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	576 bp downstream
Cpgi21701	CpG island 21701	540 bp distal
Rr195183	regulatory region 195183	1343 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84844	transcription start site region 84844	1891 bp downstream
Tssr84845	transcription start site region 84845	1854 bp downstream
Tssr84846	transcription start site region 84846	1799 bp downstream
Tssr84847	transcription start site region 84847	1137 bp downstream
Tssr84848	transcription start site region 84848	1059 bp downstream
Tssr84849	transcription start site region 84849	1023 bp downstream
Tssr84850	transcription start site region 84850	981 bp downstream
Tssr84851	transcription start site region 84851	946 bp downstream
Tssr84852	transcription start site region 84852	849 bp downstream
Tssr84853	transcription start site region 84853	815 bp downstream
Tssr84854	transcription start site region 84854	802 bp downstream
Tssr84855	transcription start site region 84855	782 bp downstream
Tssr84856	transcription start site region 84856	771 bp downstream
Tssr84857	transcription start site region 84857	649 bp downstream
Tssr84858	transcription start site region 84858	612 bp downstream
Tssr89313	transcription start site region 89313	1070 bp upstream
Tssr89314	transcription start site region 89314	1042 bp upstream
Tssr89315	transcription start site region 89315	1019 bp upstream
Tssr89316	transcription start site region 89316	999 bp upstream
Tssr89317	transcription start site region 89317	990 bp upstream
Tssr89318	transcription start site region 89318	966 bp upstream
Tssr89319	transcription start site region 89319	956 bp upstream
Tssr89320	transcription start site region 89320	943 bp upstream
Tssr89321	transcription start site region 89321	918 bp upstream
Tssr89322	transcription start site region 89322	835 bp upstream
Tssr89323	transcription start site region 89323	783 bp upstream
Tssr89324	transcription start site region 89324	755 bp upstream
Tssr89325	transcription start site region 89325	730 bp upstream
Tssr89326	transcription start site region 89326	696 bp upstream
Tssr89327	transcription start site region 89327	582 bp upstream