rs8254918 SNP Detail

Summary

• ID
  rs8254918
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143043 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GAAGGCTGTT GGTGTGAGAG
  TGCTTCTGCA GACATCCTCA ACCCTGTGAA CATGAGTGCT TGGTTACACT CCATAGCGGG
  CAAGTCTATA CAATGAACAG TCTGGGCTTG GCAGGCAGCT CAGGTGGTAG AGGGCTTGCC
  TTGCATGCAC AGAGCTCTGG GTTTGTCTCA GCACAGAGTA ACAGTGGTGG ACCATCCTTG
  W
  AACCCCCAGC ACTTGGGAGA TGGGGCAGAA AGATCAGAGC TCATCTGAGT CTAGCCTGGG
  CTAGTGGAGA CACTGTCTCC AAATAAAATA AATACAAACA AGGACTGGCA AGATGGCTTA
  GCTAGTAGAT AAATACAAAC AAGAACTGGC AAGATGGCTT AGCTAGTAGA GACGCTCGCT
  ACACTAATCC TGGTGACCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12750968	L04149_DA289_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8254918					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143043 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1276 bp downstream
Apoc3	apolipoprotein C-III	1305 bp downstream
Cpgi21701	CpG island 21701	1240 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1610 bp proximal
Rr206362	regulatory region 206362	642 bp distal
Rr206363	regulatory region 206363	1757 bp proximal
Tssr84847	transcription start site region 84847	1837 bp downstream
Tssr84848	transcription start site region 84848	1759 bp downstream
Tssr84849	transcription start site region 84849	1723 bp downstream
Tssr84850	transcription start site region 84850	1681 bp downstream
Tssr84851	transcription start site region 84851	1646 bp downstream
Tssr84852	transcription start site region 84852	1549 bp downstream
Tssr84853	transcription start site region 84853	1515 bp downstream
Tssr84854	transcription start site region 84854	1502 bp downstream
Tssr84855	transcription start site region 84855	1482 bp downstream
Tssr84856	transcription start site region 84856	1471 bp downstream
Tssr84857	transcription start site region 84857	1349 bp downstream
Tssr84858	transcription start site region 84858	1312 bp downstream
Tssr84859	transcription start site region 84859	1387 bp upstream
Tssr84860	transcription start site region 84860	1526 bp upstream
Tssr84861	transcription start site region 84861	1572 bp upstream
Tssr89313	transcription start site region 89313	1770 bp upstream
Tssr89314	transcription start site region 89314	1742 bp upstream
Tssr89315	transcription start site region 89315	1719 bp upstream
Tssr89316	transcription start site region 89316	1699 bp upstream
Tssr89317	transcription start site region 89317	1690 bp upstream
Tssr89318	transcription start site region 89318	1666 bp upstream
Tssr89319	transcription start site region 89319	1656 bp upstream
Tssr89320	transcription start site region 89320	1643 bp upstream
Tssr89321	transcription start site region 89321	1618 bp upstream
Tssr89322	transcription start site region 89322	1535 bp upstream
Tssr89323	transcription start site region 89323	1483 bp upstream
Tssr89324	transcription start site region 89324	1455 bp upstream
Tssr89325	transcription start site region 89325	1430 bp upstream
Tssr89326	transcription start site region 89326	1396 bp upstream
Tssr89327	transcription start site region 89327	1282 bp upstream
Tssr89328	transcription start site region 89328	1354 bp downstream
Tssr89329	transcription start site region 89329	1425 bp downstream
Tssr89330	transcription start site region 89330	1471 bp downstream
Tssr89331	transcription start site region 89331	1504 bp downstream
Tssr89332	transcription start site region 89332	1579 bp downstream