rs8254919 SNP Detail

Summary

• ID
  rs8254919
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143003 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGAG ATGGGGCAGA AAGATCAGAG
  M
  TCATCTGAGT CTAGCCTGGG CTAGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12750969	L04149_DA289_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8254919					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143003 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1236 bp downstream
Apoc3	apolipoprotein C-III	1345 bp downstream
Cpgi21701	CpG island 21701	1200 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1650 bp proximal
Rr206362	regulatory region 206362	602 bp distal
Rr206363	regulatory region 206363	1797 bp proximal
Tssr84847	transcription start site region 84847	1797 bp downstream
Tssr84848	transcription start site region 84848	1719 bp downstream
Tssr84849	transcription start site region 84849	1683 bp downstream
Tssr84850	transcription start site region 84850	1641 bp downstream
Tssr84851	transcription start site region 84851	1606 bp downstream
Tssr84852	transcription start site region 84852	1509 bp downstream
Tssr84853	transcription start site region 84853	1475 bp downstream
Tssr84854	transcription start site region 84854	1462 bp downstream
Tssr84855	transcription start site region 84855	1442 bp downstream
Tssr84856	transcription start site region 84856	1431 bp downstream
Tssr84857	transcription start site region 84857	1309 bp downstream
Tssr84858	transcription start site region 84858	1272 bp downstream
Tssr84859	transcription start site region 84859	1427 bp upstream
Tssr84860	transcription start site region 84860	1566 bp upstream
Tssr84861	transcription start site region 84861	1612 bp upstream
Tssr89313	transcription start site region 89313	1730 bp upstream
Tssr89314	transcription start site region 89314	1702 bp upstream
Tssr89315	transcription start site region 89315	1679 bp upstream
Tssr89316	transcription start site region 89316	1659 bp upstream
Tssr89317	transcription start site region 89317	1650 bp upstream
Tssr89318	transcription start site region 89318	1626 bp upstream
Tssr89319	transcription start site region 89319	1616 bp upstream
Tssr89320	transcription start site region 89320	1603 bp upstream
Tssr89321	transcription start site region 89321	1578 bp upstream
Tssr89322	transcription start site region 89322	1495 bp upstream
Tssr89323	transcription start site region 89323	1443 bp upstream
Tssr89324	transcription start site region 89324	1415 bp upstream
Tssr89325	transcription start site region 89325	1390 bp upstream
Tssr89326	transcription start site region 89326	1356 bp upstream
Tssr89327	transcription start site region 89327	1242 bp upstream
Tssr89328	transcription start site region 89328	1394 bp downstream
Tssr89329	transcription start site region 89329	1465 bp downstream
Tssr89330	transcription start site region 89330	1511 bp downstream
Tssr89331	transcription start site region 89331	1544 bp downstream
Tssr89332	transcription start site region 89332	1619 bp downstream