rs8254920 SNP Detail

Summary

• ID
  rs8254920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142998 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGGG GCAGAAAGAT CAGAGCTCAT
  Y
  TGAGTCTAGC CTGGGCTAGT GGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12750970	L04149_DA289_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8254920					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142998 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1231 bp downstream
Apoc3	apolipoprotein C-III	1350 bp downstream
Cpgi21701	CpG island 21701	1195 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1655 bp proximal
Rr195183	regulatory region 195183	1998 bp distal
Rr206362	regulatory region 206362	597 bp distal
Rr206363	regulatory region 206363	1802 bp proximal
Tssr84847	transcription start site region 84847	1792 bp downstream
Tssr84848	transcription start site region 84848	1714 bp downstream
Tssr84849	transcription start site region 84849	1678 bp downstream
Tssr84850	transcription start site region 84850	1636 bp downstream
Tssr84851	transcription start site region 84851	1601 bp downstream
Tssr84852	transcription start site region 84852	1504 bp downstream
Tssr84853	transcription start site region 84853	1470 bp downstream
Tssr84854	transcription start site region 84854	1457 bp downstream
Tssr84855	transcription start site region 84855	1437 bp downstream
Tssr84856	transcription start site region 84856	1426 bp downstream
Tssr84857	transcription start site region 84857	1304 bp downstream
Tssr84858	transcription start site region 84858	1267 bp downstream
Tssr84859	transcription start site region 84859	1432 bp upstream
Tssr84860	transcription start site region 84860	1571 bp upstream
Tssr84861	transcription start site region 84861	1617 bp upstream
Tssr89313	transcription start site region 89313	1725 bp upstream
Tssr89314	transcription start site region 89314	1697 bp upstream
Tssr89315	transcription start site region 89315	1674 bp upstream
Tssr89316	transcription start site region 89316	1654 bp upstream
Tssr89317	transcription start site region 89317	1645 bp upstream
Tssr89318	transcription start site region 89318	1621 bp upstream
Tssr89319	transcription start site region 89319	1611 bp upstream
Tssr89320	transcription start site region 89320	1598 bp upstream
Tssr89321	transcription start site region 89321	1573 bp upstream
Tssr89322	transcription start site region 89322	1490 bp upstream
Tssr89323	transcription start site region 89323	1438 bp upstream
Tssr89324	transcription start site region 89324	1410 bp upstream
Tssr89325	transcription start site region 89325	1385 bp upstream
Tssr89326	transcription start site region 89326	1351 bp upstream
Tssr89327	transcription start site region 89327	1237 bp upstream
Tssr89328	transcription start site region 89328	1399 bp downstream
Tssr89329	transcription start site region 89329	1470 bp downstream
Tssr89330	transcription start site region 89330	1516 bp downstream
Tssr89331	transcription start site region 89331	1549 bp downstream
Tssr89332	transcription start site region 89332	1624 bp downstream